View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732R-Insertion-2 (Length: 573)
Name: NF1732R-Insertion-2
Description: NF1732R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732R-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 9 - 532
Target Start/End: Original strand, 630939 - 631461
Alignment:
| Q |
9 |
ttgaattcatgtttcaaaatggttaccgaaaaaccttttagtagctatattattttcgcttgtgtgaataatttaattatcaaatttcaacttttctttc |
108 |
Q |
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| T |
630939 |
ttgaattcatgtttcaaaatggttatcgaaaaaccttttagtagctatattattttcgcttgtgtgaataatttaattatcaaatttcaactttcctttc |
631038 |
T |
|
| Q |
109 |
aattccaataaaaactatgcaaaaatcgctgaatttcattgtgataatactagacccgatcaggtcatatatcgggtcagtaaaccccgtttcaaaccat |
208 |
Q |
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| T |
631039 |
aattccaataaaaactatgcaaaaatcgctgaatttcattgtgataatactaaacccgatcaggtcatatatcgggtcagtaaaccccgtttcagaccat |
631138 |
T |
|
| Q |
209 |
caggtaaagaagacgacnnnnnnnnnnnataaagggtaaagaagagtataattcatgaataaataaacaatataaattaaagccaaataaacttgagcgt |
308 |
Q |
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| T |
631139 |
caggtaaagaagacgactttttttttt-ataaagggtaaagaagagtataattcatgaataaataaacaatataaattaaagccaaataaacttgagcgt |
631237 |
T |
|
| Q |
309 |
gtagctcccaaggttaaaatatattttgcatttttgtaaggtgtgtcatttacatcctaccaagtgaaatataaacaaataagttatagcataatgagta |
408 |
Q |
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| T |
631238 |
gtagctcccaaggttaaaatatattttgcatttttgtaaggtgtgtcatttacatcctaccaagtgaaatataaacaaataagttatagcataatgagta |
631337 |
T |
|
| Q |
409 |
tacagtaaccggtggaaatagcatgataatagattaaatatgtatatttaaaaacaatgataacaaactgataatatcatagtcaatcattgtccttcta |
508 |
Q |
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| T |
631338 |
tatagtaaccggtggaaatagcatgataatagattaaatatgtatatttaaaaacaatgataacaaactgataatatcatagtcaatcatcgtccttcta |
631437 |
T |
|
| Q |
509 |
aacttttgacattgcacaggttct |
532 |
Q |
| |
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| T |
631438 |
aacttttgacattgcacaggttct |
631461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 30338620 - 30338659
Alignment:
| Q |
366 |
taccaagtgaaatataaacaaataagttatagcataatga |
405 |
Q |
| |
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| T |
30338620 |
taccaaatgaaatataaacgaataagttatagcataatga |
30338659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 9795190 - 9795139
Alignment:
| Q |
367 |
accaagtgaaatataaacaaataagttatagcataatgagtatacagtaacc |
418 |
Q |
| |
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|
| T |
9795190 |
accaaatgaaatataaacgaataagttatagcataatgaatgtatagtaacc |
9795139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 4783383 - 4783319
Alignment:
| Q |
373 |
tgaaatataaacaaataagttatagcataatgagtatacagtaaccggtggaaatagcatgataa |
437 |
Q |
| |
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|||||||||| | |||||||||||||||||||| | |||| ||||| | |||||||||||||| |
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| T |
4783383 |
tgaaatataatcgaataagttatagcataatgaatgtacaataaccaataaaaatagcatgataa |
4783319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 26666146 - 26666094
Alignment:
| Q |
366 |
taccaagtgaaatataaacaaataagttatagcataatgagtatacagtaacc |
418 |
Q |
| |
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|||||| |||||||||||| ||||||||||| |||||||| | || ||||||| |
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| T |
26666146 |
taccaaatgaaatataaacgaataagttataacataatgaatgtatagtaacc |
26666094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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