View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732R-Insertion-3 (Length: 553)
Name: NF1732R-Insertion-3
Description: NF1732R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732R-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 10 - 553
Target Start/End: Original strand, 26738814 - 26739353
Alignment:
| Q |
10 |
tttgaaagttaacatttttgtgtgatgtcttcttcgaaagtgtcttctaacaaaagacaatttaagctagagggtggtgattccggcaactgctaaatct |
109 |
Q |
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| T |
26738814 |
tttgaaagttaacatttttgtgtgatgtcttcttcgaaagtgtcttctaacaaaagacaatttaagcaagagggtggtgattccggcaactgctaaatct |
26738913 |
T |
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| Q |
110 |
tgtttaggaaattggagcaatctggaggatgcgactcatctttttcttcattgcaacaatgtccatcaggtttggatcactattatgactggttagactt |
209 |
Q |
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| T |
26738914 |
tgtttaggaaattgcagcaatctggaggatgcgactcatctttttcttcatttcaacaatgtccatca----tggatcactattatgactggttagactt |
26739009 |
T |
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| Q |
210 |
agtcatgtacctccttacaatatctcataacatcttatacaattttgtgtcttgggaggattctcgaaatccaaactagatttttctcatttaatctggt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |
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| T |
26739010 |
agtcatgtacctccttacaatatctcataacatcttatacaattttgtgtcttgggaggattctcgaaatccaaacgagttttttc-catttaatctggt |
26739108 |
T |
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| Q |
310 |
tttctactatttagattagttggaaagaatgaaatgccagaatcttcctaatagagag-atttcattcaccacctgcttgacaaagttaaggcgcattct |
408 |
Q |
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| T |
26739109 |
tttctactatttagattagttggaaagaatgaaatgccagaatcttcctaatagagaggatttcattcaccgcctgcttgacaaagttaaggcgcattct |
26739208 |
T |
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| Q |
409 |
tataggatgactaaaggcgaaacacattaactttgcttctagttacaacatgtgttggctcaatcctcttccatacttgtaattataactttttcttagc |
508 |
Q |
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| T |
26739209 |
tataggatgactaaaggcgaaacacatcaactttgcttctggttacaacatgtgttggctcaatcctcttccatacttgtaattataactttttcttagc |
26739308 |
T |
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| Q |
509 |
tttgtttttggtgttttaaccggtatttgatgtaatttacttttc |
553 |
Q |
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| T |
26739309 |
tttgtttttggtgttttaaccggtatttgatgtaatttacttttc |
26739353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 53 - 352
Target Start/End: Original strand, 19706938 - 19707238
Alignment:
| Q |
53 |
cttctaacaaaagacaatttaagctagagggtggtgattccggcaactgctaaatcttgtttaggaaattggagcaatctggaggatgcgactcatcttt |
152 |
Q |
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| T |
19706938 |
cttccaacaaaagataatttaagcaagagggcggtgattccggcaactgatcaatcttgtgggggaaatggcagcaatctggaggatgcgactcatcttt |
19707037 |
T |
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| Q |
153 |
ttcttcattgcaacaatgtccatcaggtttggatcact-attatgactggttagacttagtca-tgtacctccttacaatatctcataacatcttataca |
250 |
Q |
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| T |
19707038 |
ttcttcatcacaactattttcatcaggtttgggtcactgtttacgactggttaggcttagtcacggtacctccttacaatatttcagaaca-cctacaca |
19707136 |
T |
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| Q |
251 |
attttgtgtcttgggaggattctcgaaatccaaactagatttttctcatttaatctggttttctactatttagattagttggaaagaatgaaatgccaga |
350 |
Q |
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| T |
19707137 |
atttcatttcttgggaggactctcgaaatccaaatgaggtcttattcatttaatctggttttctattgtttggattatttggaaagaaagaaatgctaga |
19707236 |
T |
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| Q |
351 |
at |
352 |
Q |
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|| |
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| T |
19707237 |
at |
19707238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 477
Target Start/End: Complemental strand, 22617368 - 22617265
Alignment:
| Q |
373 |
attcaccacctgcttgacaaagttaaggcgcattcttataggatgactaaaggcgaaacacattaactttgcttctagttacaacatgtgttggctcaat |
472 |
Q |
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| T |
22617368 |
attcaccacttgcttgacaaaattaagccacattcttat-ggatggccaaagatgaaacatgtcaactttacttttagttaccacgtgtggtggatcaat |
22617270 |
T |
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| Q |
473 |
cctct |
477 |
Q |
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||||| |
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| T |
22617269 |
cctct |
22617265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 284
Target Start/End: Complemental strand, 23007553 - 23007318
Alignment:
| Q |
53 |
cttctaacaaaagacaatttaagctagagggtggtgattccggcaactgctaaatcttgtttaggaaattggagcaatctggaggatgcgactcatcttt |
152 |
Q |
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|||| ||||||||||||||||||| | |||| || |||||| ||| |||| |||||||| | |||||| | | ||| |||||||| | |||||| ||| |
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| T |
23007553 |
cttccaacaaaagacaatttaagcaaaagggcggcaattccgacaattgcttaatcttgtgtgggaaatagtggtaatatggaggatacaactcattttt |
23007454 |
T |
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| Q |
153 |
tt--cttcattgcaacaatgtccatcaggtttggatcactatt-atgactggttagacttagtcatg-tacctccttacaatatctcataacatcttata |
248 |
Q |
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| T |
23007453 |
ttttcttcattgacactatttttgtcaggtttgaatcgatgtttatgattggttaaacttagtcatggtacctctttacaaaatctcaaaacaccttacc |
23007354 |
T |
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| Q |
249 |
caattttgtgtcttgggaggattctcgaaatccaaa |
284 |
Q |
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| T |
23007353 |
aaattttgtgttttgggaggattctccaaatccaaa |
23007318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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