View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732R-Insertion-4 (Length: 527)
Name: NF1732R-Insertion-4
Description: NF1732R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732R-Insertion-4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 5894278 - 5893759
Alignment:
| Q |
8 |
atttgaatctttagcaaacacacaattattaagagaaaagcttattgattattggacgagctttgcattgtgcctccaatggaatggccataggcaacag |
107 |
Q |
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| T |
5894278 |
atttgaatctttagcaaacacacaattattaagagaaaagcttattgattattggacgagctttgcattgtgcctccaatggaatggccataggcaacag |
5894179 |
T |
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| Q |
108 |
agttccacgtccttcagtcatatcaactccttccttgccaatacttttccattcaaagcattgaatcaaagatcccaaagtcaagctcaaagttctcagg |
207 |
Q |
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| T |
5894178 |
agttccacgtccttcagtcatatcaactccttccttgccaatccttttccattcaaagcattgaatcaaagatcccaaagtcaagctcaaagttctcagg |
5894079 |
T |
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| Q |
208 |
gctaagcccgacccaggacaagccctcctccccatcccaaaaggaataaacccatgtttgtctccttgatgaccatcctcaaacctctcgggcttaaagc |
307 |
Q |
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| T |
5894078 |
gctaagcccgacccaggacaagccctcctccccatcccaaaaggaataaacccatgtttgtctccttgatgaccatcctcaaacctctcgggcttaaagc |
5893979 |
T |
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| Q |
308 |
tcatagggtcagcccacaaattagggtctctatgaatagcccaagcattcaccatcaacatggtgttttgaggcacatcatagcctcccacagtgcaagc |
407 |
Q |
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| T |
5893978 |
tcatagggtcagcccacaaattagggtctctatgaatagcccaagcattcaccatcaacatggtgttttgaggcacatcatagcctcctacagtgcaagc |
5893879 |
T |
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| Q |
408 |
tttagatgataaatgtggtaacaacattggtgctgctggatgcaaccgtaaagtctcagagataatattttgaaggtactttaatttggtagcttcaatt |
507 |
Q |
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| T |
5893878 |
tttagttgataaatgtggtaacaacattggtgctgctggatgcaaccgtaaagtctcagagataatattttgaaggtactttaatttggtagcttcaact |
5893779 |
T |
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| Q |
508 |
tcctcaattaagtgctcttg |
527 |
Q |
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| T |
5893778 |
tcctcaattaagtgctcttg |
5893759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 377
Target Start/End: Complemental strand, 5886278 - 5886186
Alignment:
| Q |
285 |
ctcaaacctctcgggcttaaagctcatagggtcagcccacaaattagggtctctatgaatagcccaagcattcaccatcaacatggtgttttg |
377 |
Q |
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| T |
5886278 |
ctcaaacctctctggcttaaaacaagtaggatcactccacaaatttggatctctatgaatgacccaagcattcaccatcaaaattgtgttttg |
5886186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 9400327 - 9400359
Alignment:
| Q |
327 |
attagggtctctatgaatagcccaagcattcac |
359 |
Q |
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| T |
9400327 |
attagagtctctatgaatagcccaagcattcac |
9400359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 20074089 - 20074121
Alignment:
| Q |
327 |
attagggtctctatgaatagcccaagcattcac |
359 |
Q |
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| T |
20074089 |
attagggtctgtatgaatagcccaagcattcac |
20074121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 9000218 - 9000250
Alignment:
| Q |
327 |
attagggtctctatgaatagcccaagcattcac |
359 |
Q |
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| T |
9000218 |
attagggtctctctgaatagcccaagcattcac |
9000250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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