View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732R-Insertion-7 (Length: 352)
Name: NF1732R-Insertion-7
Description: NF1732R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732R-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 44017072 - 44017409
Alignment:
| Q |
9 |
atgctaaaaaagagtaagcaaaagaacaaagaggtaacactaatattttccatttttgattgtgaaaatggtggctttacttggagtcggagattaatgt |
108 |
Q |
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| T |
44017072 |
atgctaaaaaagagtaagcaaaagaacaaagaggtaacactaatattttccatttttgattgtgaaaatggtgactttacttggagttggagattaatgt |
44017171 |
T |
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| Q |
109 |
agaagatgagggtgaaggtgaaggtgaaggtaataaaagactactagtttaggagagcacatgcatgatgcttaagtttcacacaaacgttttaaacaaa |
208 |
Q |
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| T |
44017172 |
agaagatgagggtg------aaggtgaaggtgataaaagactactagtttaggagagcacatgcatgatgcttaagtttcacacaaacgttttaaacaca |
44017265 |
T |
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| Q |
209 |
agcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaaggaatggacaaagctttctat |
308 |
Q |
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| T |
44017266 |
agcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaaggaatggacaaagctttctat |
44017365 |
T |
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| Q |
309 |
ttgttatcttagacatataccagaatgtaccttaactatctttg |
352 |
Q |
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| T |
44017366 |
ttgttatcttagacatataccagaatgtaccttaactatctttg |
44017409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 31037218 - 31037093
Alignment:
| Q |
172 |
catgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagta---gtatgtttaagaagggagataatagag |
268 |
Q |
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| T |
31037218 |
catgatgcttaggtttcacacaaatgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagag |
31037119 |
T |
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| Q |
269 |
at--gagagaatggtcaaaaaggaat |
292 |
Q |
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| T |
31037118 |
ctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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