View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732R-Insertion-8 (Length: 314)
Name: NF1732R-Insertion-8
Description: NF1732R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732R-Insertion-8 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 30304670 - 30304991
Alignment:
| Q |
8 |
aagtacaagtacatgttagtatttattatatgaaacttgtaagaaaaaataaacatcacgtataaagtaccattatggaggagaagcgtggattgatagg |
107 |
Q |
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| T |
30304670 |
aagtacaagtacatgttagtatttattatatgaaacttgtaagaaaaaataaacaacacgtataaagtaccattatggaggagaagcgtggattgatagg |
30304769 |
T |
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| Q |
108 |
taagaaattttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaatccgaaaacatatgaacataagggtggtgtattgaag |
207 |
Q |
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| T |
30304770 |
taagaaattttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaatccgaaaacatatgaacataagggtggtgtattgaag |
30304869 |
T |
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| Q |
208 |
aattgtccacttggacttactggctctgttacatcttcaaagttgtccattatagtactat---------------aagtagagactaatattaaattga |
292 |
Q |
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| T |
30304870 |
aattgtccacttggacttactggctctgttacatcttcaaagttgtccattatagtactataagcaccgtgttagaaagtagagactaatattaaattga |
30304969 |
T |
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| Q |
293 |
ctatataaagaatgaaaacttg |
314 |
Q |
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| T |
30304970 |
ctatataaagaatgaaaacttg |
30304991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 30280586 - 30280337
Alignment:
| Q |
8 |
aagtacaagtacatgttagtatttattatatgaaacttgtaagaaaaaataaacatcacgtataaagtaccattatggaggagaagcgtggattgatagg |
107 |
Q |
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| T |
30280586 |
aagtacaagtacatgttagtatttattatatgaaacttgtaagaaaaaataaacaacacgtataaagtaccattatggaggagaagcgtggattgatagg |
30280487 |
T |
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| Q |
108 |
taagaaattttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaatccgaaaacatatgaacataagggtggtgtattgaag |
207 |
Q |
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| T |
30280486 |
taagaaattttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaatccg-aaacatatgaacataagggtggtgtattgaag |
30280388 |
T |
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| Q |
208 |
aattgtccacttggacttactggctctgttacatcttcaaagttgtccatt |
258 |
Q |
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| T |
30280387 |
aattgtccacttggacttactggctcagttagatcttcaaagttgtccatt |
30280337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 30271633 - 30271885
Alignment:
| Q |
14 |
aagtacatgttagtatttattatatgaaacttgtaagaaaaaataaacat--cacgtataaagtaccattatggaggagaagcgtggattgataggtaag |
111 |
Q |
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| T |
30271633 |
aagtacatgttcgtatttattgtatgcaacttttaaggcaaaataaacacaacacttataaagtaccattatggaggagaaacgtggattgataggtaag |
30271732 |
T |
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| Q |
112 |
aa---attttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaatccgaaaacatatgaacataagggtggtgtattgaaga |
208 |
Q |
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| T |
30271733 |
aagacatgttggaacaaatacatagtttgagaatcatcaattggaatttgtgattccaaaaatccgaaaacatatgaacataggggtggtgtgttgaagt |
30271832 |
T |
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| Q |
209 |
attgtccacttggacttactggctctgttacatcttcaaagttgtccattata |
261 |
Q |
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| T |
30271833 |
attgtccacttggacttactggctcggttacatattcaaagttgtccattata |
30271885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 30264770 - 30264957
Alignment:
| Q |
74 |
gtaccattatggaggagaagcgtggattgataggtaagaa---attttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaa |
170 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||| || ||||||||||||||||| ||||| |
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| T |
30264770 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
30264869 |
T |
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| Q |
171 |
tccgaaaacatatgaacataagggtggtgtattgaagaattgtccacttggacttactggctctgttacatcttcaaagttgtccatt |
258 |
Q |
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| T |
30264870 |
tccaaaaacatatgaacataggggaggggtgttgaaatattgtccacttggacttactggctcagttagatcttcaaagttgtccatt |
30264957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 30287418 - 30287231
Alignment:
| Q |
74 |
gtaccattatggaggagaagcgtggattgataggtaagaa---attttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaa |
170 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||| || ||||||||||||||||| ||||| |
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| T |
30287418 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
30287319 |
T |
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| Q |
171 |
tccgaaaacatatgaacataagggtggtgtattgaagaattgtccacttggacttactggctctgttacatcttcaaagttgtccatt |
258 |
Q |
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| T |
30287318 |
tccaaaaacatatgaacataggggaggggtgttgaaatattgtccacttggacttactggctcagttagatcttcaaagttgtccatt |
30287231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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