View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732R-Insertion-9 (Length: 242)
Name: NF1732R-Insertion-9
Description: NF1732R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732R-Insertion-9 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 32651216 - 32651083
Alignment:
| Q |
9 |
cgcaattatcataccagccattgatcgcatgttaatgctggcttgcacacatcacaaccatcaattcaaatttgaattttccccattggaactctgattg |
108 |
Q |
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| T |
32651216 |
cgcaattatcatatcagtcattgatcacatcttaatgatggcttgcacacatcacaaccatcaattcaaatttgaatttttcccattggaactctaattg |
32651117 |
T |
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| Q |
109 |
ttcactgaaccgctaaaaatctgtgtgatatttt |
142 |
Q |
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| T |
32651116 |
ttcaccgaaccgctaaaaatcagtgtgatatttt |
32651083 |
T |
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Target: scaffold0352 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 16791 - 16628
Alignment:
| Q |
11 |
caattatcataccagccatt-gatcgcatgttaatgctggcttgcacacatcacaaccatcaattcaaatttgaattttccccattggaactctgattgt |
109 |
Q |
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| T |
16791 |
caattaacatatcagccatttgatcatatcttaatgctggcttacacacatcacaaccatcaattcaaatttgaattttccccattggaactctaattgt |
16692 |
T |
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| Q |
110 |
tcactgaaccgctaaaaatctgtgtgata-ttttactattccaacgcacatacattcccatgactt |
174 |
Q |
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| T |
16691 |
tcaccga--tgctaaaaatcagtgtgatatttttactattccaatgcacatacattctcatgactt |
16628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 4289974 - 4290044
Alignment:
| Q |
91 |
ccattggaactctgattgttcactgaaccgctaaaaatctgtgtgata-ttttactattccaacgcacata |
160 |
Q |
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| T |
4289974 |
ccattgaaactctaatttttcaccgatccgctaaaaatcagtgtgatatttttactattccaatgcacata |
4290044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 27283072 - 27283007
Alignment:
| Q |
15 |
tatcataccagccattgatcgcatgttaatgctggcttgcacacatcacaaccatcaattcaaatt |
80 |
Q |
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| T |
27283072 |
tatcatatcagcctttgatctcatctgaatgatggcttgcacacatcacaacaatcagttcaaatt |
27283007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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