View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_high_12 (Length: 333)
Name: NF1732_high_12
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 135 - 326
Target Start/End: Complemental strand, 32093775 - 32093584
Alignment:
| Q |
135 |
aaaattgagctgaccaatgtattgagttcaaatcatgtaattgttataggacaatattttcatcatattgagaacatgaggccaaattcaaaccaatatt |
234 |
Q |
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| T |
32093775 |
aaaattgagctgaccaatgtattgagttcaaagcatgtaattgttataggacaatattttcatcatattgagaacatgaggccaaattcaaaccaatatt |
32093676 |
T |
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| Q |
235 |
ttaattttagcactgttgactcaagactggctagagtggaacagttgagtgccaaagttcatgtgttagctattttaattgaagtataatct |
326 |
Q |
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| T |
32093675 |
ttaattttagcactgttgactcaagactggctagagtggaacagttgagtgccaaagttcatgtgttagctattttaattgaagtattatct |
32093584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 32095387 - 32095274
Alignment:
| Q |
17 |
catctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgatcaaatgtgtggttacttgacattgacaacagggaatcaatatccgttat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095387 |
catctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgaacgaatgtgtggttacttgacattgacaacagggaatcaatatccgttat |
32095288 |
T |
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| Q |
117 |
agtgaccaataggg |
130 |
Q |
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| T |
32095287 |
agtgaccaataggg |
32095274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 32088285 - 32088244
Alignment:
| Q |
89 |
ttgacaacagggaatcaatatccgttatagtgaccaataggg |
130 |
Q |
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| T |
32088285 |
ttgacaacagggaatcgatatccgttatagtgatcaataggg |
32088244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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