View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1732_high_17 (Length: 282)
Name: NF1732_high_17
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 50663642 - 50663382
Alignment:
| Q |
13 |
attatacttcaaagatttgcagtagagagtga--ttattatatctatgttatccgaaattggataatagggaaaaataaaaggagttgcttgaacatttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50663642 |
attatacttcaaagatttgcagtagagagtgagattattatatctatgttatccgaaagtggataatagggaaaaacaaaaggagttgcttgaacatttg |
50663543 |
T |
|
| Q |
111 |
aaaaatctatgatctccctaaacaaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttgattgcacaaaagttaatgttcatcct |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50663542 |
aaaaatctatgatctccctgaacaaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttgattgcacaaaagttaatgtttatcct |
50663443 |
T |
|
| Q |
211 |
tattatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50663442 |
tattatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgat |
50663382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 50653901 - 50653846
Alignment:
| Q |
214 |
tatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgatg |
272 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
50653901 |
tatgtcattgttctagtatacattgtgtgtttgaaataaata---tcattatgatgatg |
50653846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 50654052 - 50654001
Alignment:
| Q |
134 |
aaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttga |
185 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
50654052 |
aaacactttaaggtggtaggttgagaaagttttacaattccgtagaagttga |
50654001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University