View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1732_high_19 (Length: 278)
Name: NF1732_high_19
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 26 - 262
Target Start/End: Original strand, 55824801 - 55825037
Alignment:
| Q |
26 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55824801 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
55824900 |
T |
|
| Q |
126 |
ccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55824901 |
ccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
55825000 |
T |
|
| Q |
226 |
aagaattatctgaacaatttgatatcggtgaagatgt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825001 |
aagaattatctgaacaatttgatatcggtgaagatgt |
55825037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 26 - 262
Target Start/End: Complemental strand, 56150180 - 56149944
Alignment:
| Q |
26 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56150180 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
56150081 |
T |
|
| Q |
126 |
ccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56150080 |
ccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
56149981 |
T |
|
| Q |
226 |
aagaattatctgaacaatttgatatcggtgaagatgt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149980 |
aagaattatctgaacaatttgatatcggtgaagatgt |
56149944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University