View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1732_high_20 (Length: 277)

Name: NF1732_high_20
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1732_high_20
NF1732_high_20
[»] chr1 (2 HSPs)
chr1 (1-273)||(5333803-5334090)
chr1 (87-159)||(17010879-17010952)
[»] chr6 (3 HSPs)
chr6 (98-265)||(14637783-14637950)
chr6 (83-152)||(26339383-26339453)
chr6 (91-159)||(15669562-15669631)
[»] chr7 (2 HSPs)
chr7 (78-211)||(9792459-9792592)
chr7 (78-152)||(28106885-28106960)
[»] chr8 (2 HSPs)
chr8 (111-238)||(24955119-24955245)
chr8 (78-152)||(24970867-24970942)
[»] chr4 (2 HSPs)
chr4 (83-159)||(44742537-44742614)
chr4 (83-159)||(13089644-13089721)
[»] chr5 (2 HSPs)
chr5 (91-211)||(29963912-29964032)
chr5 (91-211)||(30010766-30010886)
[»] chr3 (1 HSPs)
chr3 (83-159)||(36330676-36330753)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 5334090 - 5333803
Alignment:
Q  1 atctacccttccgctttaaattttacgataagttaaccattaacttagggcattgaatatggatataaaaatacaaa----------------cctcttt 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||                 |||||||    
T  5334090 atctacccttccgctttaaattttacgataagttaaccattaacttagggcattgaataaggatataaaaatagaatttatagtatgtttggtcctcttt 5333991  T
Q  85 atttttcacttatcttttacttctaaaagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnngtaaagaaggaaatc 184  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  5333990 atttttcactaatcttttacttctaagagaagtggagccaaacataattttagtaaaactcttaataaaataagttactttttt-gtaaagaaggaaatc 5333892  T
Q  185 caacaaaaataattttaaaaataagatgtgaaattgaactttggaacaactttttagcatttctatcagcttctgcacctttgcttctc 273  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  5333891 caacaaaaatgattttaaaaataagatgtgaaattgaactttggaacaacttttcagcatttatatcagcttctgcacctttgattctc 5333803  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 17010879 - 17010952
Alignment:
Q  87 ttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 159  Q
    |||||||||||||| ||||||||| ||||||||| |||||||| ||||||| | ||  ||||||||||| ||||    
T  17010879 ttttcacttatcttctacttctaagaagaagtggggccaaacacaattttaattaagttcttaataaaagaagt 17010952  T

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Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 14637950 - 14637783
Alignment:
Q  98 cttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnngtaaagaaggaaatccaacaaaaataa 196  Q
    |||||||||||||  |||||||| |||||||||||||||||||||  |||||||||||||||| ||       ||||||||||||||||||||||||| |    
T  14637950 cttttacttctaaggagaagtggggccaaacataattttagtaaagttcttaataaaataagtgacgttttt-gtaaagaaggaaatccaacaaaaatga 14637852  T
Q  197 ttttaaaaataagatgtgaaattgaactttggaacaactttttagcatttctatcagcttctgcacctt 265  Q
     ||||||||||||||||||||||||||||| ||||||||||||  || || ||||||||||||||||||    
T  14637851 ctttaaaaataagatgtgaaattgaactttagaacaactttttgacacttatatcagcttctgcacctt 14637783  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 26339453 - 26339383
Alignment:
Q  83 ttatttttcacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataa 152  Q
    ||||||| || ||||||||||||| |||| |||||||| |||||||||||||||  |||| ||||||||||    
T  26339453 ttattttccatttatcttttacttttaaagagaagtggggccaaacataattttgataaagctcttaataa 26339383  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 15669631 - 15669562
Alignment:
Q  91 cacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 159  Q
    |||||||||| ||||||||| ||||||||| | |||||| ||||||| | ||| ||||||||||||||||    
T  15669631 cacttatcttctacttctaagaagaagtggggtcaaacacaattttaattaaattcttaataaaataagt 15669562  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 9792592 - 9792459
Alignment:
Q  78 cctctttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnngtaaaga 176  Q
    |||| ||||||| |||||||||||||||| ||| ||||||||| |||||||| ||||||| |||| |||||||||||| |||| ||       |||||||    
T  9792592 cctccttattttccacttatcttttacttttaagaagaagtggggccaaacacaattttaataaagctcttaataaaagaagtgac-ttttttgtaaaga 9792494  T
Q  177 aggaaatccaacaaaaataattttaaaaataagat 211  Q
    |||||||||||||||||| | ||| ||||||||||    
T  9792493 aggaaatccaacaaaaatgactttgaaaataagat 9792459  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 28106885 - 28106960
Alignment:
Q  78 cctctttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataa 152  Q
    |||| ||||||| ||||| |||| ||||||||| ||||||| || ||||||||||||||| ||||  |||||||||    
T  28106885 cctccttattttccacttctcttctacttctaagaagaagtagaaccaaacataattttaataaagttcttaataa 28106960  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 24955119 - 24955245
Alignment:
Q  111 aagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnngtaaagaaggaaatccaacaaaaataattttaaaaataaga 210  Q
    ||||||| | |||||||||||||||| |||| ||||||||||||||||| ||        |||||||| ||| |||| |||| ||| |||||||||||||    
T  24955119 aagaagtagggccaaacataattttaataaagctcttaataaaataagtaactttttta-taaagaagaaaaaccaataaaagtaactttaaaaataaga 24955217  T
Q  211 tgtgaaattgaactttggaacaactttt 238  Q
    || |||| ||||||||| ||||||||||    
T  24955218 tgggaaagtgaactttgaaacaactttt 24955245  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 24970867 - 24970942
Alignment:
Q  78 cctctttatttttcacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataa 152  Q
    |||| ||||||||||||| |||| |||||||||| |||||| | |||||||||||||||| ||||  |||||||||    
T  24970867 cctccttatttttcacttctcttctacttctaaagagaagtagggccaaacataattttaataaagttcttaataa 24970942  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 44742537 - 44742614
Alignment:
Q  83 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 159  Q
    ||||||||||||| |||| ||||||||| ||||||||| |||||||| ||||||| |||| |||||||||||||||||    
T  44742537 ttatttttcacttctcttctacttctaagaagaagtggggccaaacacaattttaataaagctcttaataaaataagt 44742614  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 13089644 - 13089721
Alignment:
Q  83 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 159  Q
    ||||||||||||| |||| ||||||||| ||||||||| | |||||| |||||||  ||| |||||||||||||||||    
T  13089644 ttatttttcacttctcttctacttctaagaagaagtggggtcaaacacaattttaacaaagctcttaataaaataagt 13089721  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 29963912 - 29964032
Alignment:
Q  91 cacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnngtaaagaaggaaatccaaca 189  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||| |||||||||| | |||| ||       ||||||||||||||||||||    
T  29963912 cacttatcttttacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgac-ttttttgtaaagaaggaaatccaaca 29964010  T
Q  190 aaaataattttaaaaataagat 211  Q
    ||| | | ||| ||||||||||    
T  29964011 aaagtgactttgaaaataagat 29964032  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 30010886 - 30010766
Alignment:
Q  91 cacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnngtaaagaaggaaatccaaca 189  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||| |||||||||| | |||| ||       ||||||||||||||||||||    
T  30010886 cacttatcttttacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgac-ttttttgtaaagaaggaaatccaaca 30010788  T
Q  190 aaaataattttaaaaataagat 211  Q
    ||| | | ||| ||||||||||    
T  30010787 aaagtgactttgaaaataagat 30010766  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 36330676 - 36330753
Alignment:
Q  83 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 159  Q
    ||||||| ||||| |||| ||||||||| ||||||||| | |||||| ||||||| |||| || ||||||||||||||    
T  36330676 ttattttccacttctcttctacttctaagaagaagtggggtcaaacacaattttaataaagcttttaataaaataagt 36330753  T

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