View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_high_28 (Length: 245)
Name: NF1732_high_28
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 12073771 - 12073990
Alignment:
| Q |
5 |
tacttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcacaattaaaagc |
104 |
Q |
| |
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| T |
12073771 |
tacttttctaatttcatgtttagtaaagaaaaaaatgtttagtaaatgtttacagaaa------gccaaacaagtggttgaagaaggcacaattaaaagc |
12073864 |
T |
|
| Q |
105 |
agaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactttt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12073865 |
agaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactattctttatggtctttgcaactttt |
12073964 |
T |
|
| Q |
205 |
ttcttcaactttgtttcagttcaatt |
230 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
12073965 |
ttcttcaactttgtttcagttcaatt |
12073990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 12046569 - 12046791
Alignment:
| Q |
8 |
ttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcacaattaaaagcaga |
107 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12046569 |
ttttctaatttcatgtttagtaaagaaaaaaatgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcacaattaaaagcaaa |
12046668 |
T |
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| Q |
108 |
aggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttttttc |
207 |
Q |
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| T |
12046669 |
aggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagtcaacttttatatactactattctttatggtctttgccacttttttc |
12046768 |
T |
|
| Q |
208 |
ttcaactttgtttcagttcaatt |
230 |
Q |
| |
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||||| |||||||||| |||| |
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| T |
12046769 |
ctcaaccctgtttcagttaaatt |
12046791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 12050906 - 12051033
Alignment:
| Q |
103 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||| || | |
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| T |
12050906 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaaatgagccaacttttatatactactattctttatggtctctgccacgt |
12051005 |
T |
|
| Q |
203 |
ttttcttcaactttgtttcagttcaatt |
230 |
Q |
| |
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||||| ||||||||||| |||||||||| |
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|
| T |
12051006 |
ttttcctcaactttgttgcagttcaatt |
12051033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 12058123 - 12058316
Alignment:
| Q |
8 |
ttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgttt-acagaaaagcaaagccaaacaagtggttgaagaaggcac--aat------t |
98 |
Q |
| |
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|||||| |||||||||| ||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| | ||| | |
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| T |
12058123 |
ttttcttatttcatgttgagtaaagaaaaaaatgtttagtcaatgtttcatagaaaagcaaagccaaacaagtggttgaagaaggtatgtaatgctgctt |
12058222 |
T |
|
| Q |
99 |
aaaagcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtct |
193 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
12058223 |
gaaggcagaaggtatgaaatcatattgaaaaagtgaacaatcccatacag-tcaaaattgagccaacttttatataccaatattctttatggtct |
12058316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 12053434 - 12053560
Alignment:
| Q |
103 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||| || |||| |
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| T |
12053434 |
gcagaaggtatgaaatcatattgaaaaagtaaacaatctcacacagttaaaaattgagtcaacttttatatggtactattctttat-atctccgccactt |
12053532 |
T |
|
| Q |
203 |
ttttcttcaactttgtttcagttcaatt |
230 |
Q |
| |
|
||||| ||||| ||||||||||| |||| |
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|
| T |
12053533 |
ttttcctcaaccttgtttcagtttaatt |
12053560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 12066363 - 12066489
Alignment:
| Q |
103 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
202 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||| ||||| ||| |||||||||||||| |||||||||||||| || |||| |||||||||||| | || |
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| T |
12066363 |
gcagaaggtttgaaatcgtattgaaaa-gtgaataatctaacagagttaaaaattgagtcaacttttatatactacgattctatatggtctttgccattt |
12066461 |
T |
|
| Q |
203 |
ttttcttcaactttgtttcagttcaatt |
230 |
Q |
| |
|
||||| |||||||||||||| ||||||| |
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|
| T |
12066462 |
ttttcctcaactttgtttcaattcaatt |
12066489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 12063790 - 12063906
Alignment:
| Q |
112 |
atgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttttttcttca |
211 |
Q |
| |
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||||||| |||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||| ||| || |||||||| ||| |
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| T |
12063790 |
atgaaattatattgaaaaagcgaacaatctcata--gttaaatattgagccaacttttatataccactattctttatgatctccgccactttttttctca |
12063887 |
T |
|
| Q |
212 |
actttgtttcagttcaatt |
230 |
Q |
| |
|
||||||||||| ||||||| |
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| T |
12063888 |
actttgtttcaattcaatt |
12063906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 12050799 - 12050855
Alignment:
| Q |
40 |
tgtttagtaaatgttt-acagaaaagcaaagccaaacaagtggttgaagaaggcaca |
95 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
12050799 |
tgtttagtgaatgttttacagaaaagcaaagccaaacaagtggttggagaaggcaca |
12050855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 30353724 - 30353599
Alignment:
| Q |
104 |
cagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttt |
203 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| || | |||||||||||||||||| |||||||| |||| ||||||||||||| ||| |||| |
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|
| T |
30353724 |
cagaaggtatgaaattatattgaaaaggtgaacaatcccata--gttaaaaattgagccaacctttatatatcactattctttatggtctctgccacttg |
30353627 |
T |
|
| Q |
204 |
tttcttcaactttgtttcagttcaattt |
231 |
Q |
| |
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| || ||||| |||||||||||||||| |
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|
| T |
30353626 |
tctcctcaaccctgtttcagttcaattt |
30353599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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