View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_high_32 (Length: 238)
Name: NF1732_high_32
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 5347145 - 5347351
Alignment:
| Q |
16 |
atccaataaaaacttatgaaaaaactcaataacatatacttcctctattccttttaaaaacctcaacaacacctacctctctctgtttcttataacaaac |
115 |
Q |
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| T |
5347145 |
atccaataaaaacttatgaaaaaactcaataacatatacttcctctattccttttaaaaagctcaacagcacctacctctctctgtttcttataacaaac |
5347244 |
T |
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| Q |
116 |
aattgacaatctattgattgcaaaataaaataaaatttatttcaacttcacataatcaaaatttaattgtgttattcacttaagcaaaattcaatttccc |
215 |
Q |
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| T |
5347245 |
aattggcaaattattgattgcaaagtaaaataaaatttatttcaacttcacataatcaaaatttaattgtgttattcccttaagcaaaatttaacttccc |
5347344 |
T |
|
| Q |
216 |
tccaact |
222 |
Q |
| |
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|||||| |
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| T |
5347345 |
accaact |
5347351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 34766635 - 34766554
Alignment:
| Q |
142 |
aaaataaaatttatttcaacttcacat-aatcaaaatttaattgtgttattcacttaagcaaaattcaatttccctccaact |
222 |
Q |
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| T |
34766635 |
aaaataaaatatatttcaacttaacattaaccaaaatttaactttgttcttcacttaaccaaaatttaacttccctccaact |
34766554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 36245893 - 36245949
Alignment:
| Q |
126 |
ctattgattgcaaaataaaataaaatttatttcaacttcaca-taatcaaaatttaa |
181 |
Q |
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| T |
36245893 |
ctattgattgtaaagcaaaataaaaattatttcaacttcacattaatcaaaagttaa |
36245949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 5990964 - 5991043
Alignment:
| Q |
142 |
aaaataaaatttatttcaacttcaca-taatcaaaatttaattgtgttattcacttaagcaaaattcaatttccctccaa |
220 |
Q |
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| T |
5990964 |
aaaatcaaattcatttcaacttcacattaattaaaatttaactttattcttcacttaatcaaaattcaactttcctccaa |
5991043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 40349811 - 40349881
Alignment:
| Q |
136 |
caaaataaaataaaatttatttcaacttcacataat-caaaatttaattgtgttattcacttaagcaaaatt |
206 |
Q |
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| T |
40349811 |
caaaataaaataaaatt-attccaacttcacattattcaaaatttaactttgtttttcacttatgcaaaatt |
40349881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 42821628 - 42821668
Alignment:
| Q |
142 |
aaaataaaatttatttcaacttcac-ataatcaaaatttaa |
181 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
42821628 |
aaaataaaatttattccaacttcacgataatcaaaatttaa |
42821668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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