View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_high_35 (Length: 237)
Name: NF1732_high_35
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34090730 - 34090951
Alignment:
| Q |
1 |
tttaaaactattttttagtcatttaataaattgttattaagtcaagagttggtttgaaatatagatgaagtacatgcccaatatttcatatcatacaatt |
100 |
Q |
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| T |
34090730 |
tttaaaactattttttagtcatttaataaattgttattaagtcaagagttggtttgaaatatagataaagtacatgcccaatatttcatatcatacaatt |
34090829 |
T |
|
| Q |
101 |
ttaaattatgaatgcagtgagcgtgcaatataattttgtttaaaatactgagtttaaggtttcaataccatgcttaaaaagttt-aaatatttagaagaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
34090830 |
ttaaattatgaatgcagtgagcgtgcaatataattttctttaaaatactgtgtttaaggtttcaataccatgctgaaaaaatttaaaatatttagaagaa |
34090929 |
T |
|
| Q |
200 |
tacctatcatggtacttgaaaa |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
34090930 |
tacctatcatggtacttgaaaa |
34090951 |
T |
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