View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_high_43 (Length: 221)
Name: NF1732_high_43
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 43093478 - 43093290
Alignment:
| Q |
16 |
caacattgacaagttggcatcttcttgttacattttgttctcttcatgtggcactaaaaatgaaatttttcgagcacaagccttttgagcagaaagcagt |
115 |
Q |
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| T |
43093478 |
caacattgacaagttggcatcttcttgttacattttgttctcttcatgtggcactaaaaatgaaatttttcgagcacaagccttttgagcagaaagcagt |
43093379 |
T |
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| Q |
116 |
gatgggatttggaattctaaatggaatctcgattgggttgttaaatttgagtctgggtttcaattctgttggattctatcaggtatttt |
204 |
Q |
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| T |
43093378 |
gatgggatttggaattctaaatggaatctcgattgggttgttaaatttgagtctgggtttcaattctgttggattctatcaggtgtttt |
43093290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 43085519 - 43085348
Alignment:
| Q |
22 |
tgacaagttggcatcttcttgttacattttgttctcttcatgtggcactaaaaatgaaatttttcgagcacaagccttttgagcagaaagcagtgatggg |
121 |
Q |
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||||||| |||||||| ||||| ||||||||||| |||||| ||||||| ||||||| ||| |||||||||||| |||||||||||||||| || | || |
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| T |
43085519 |
tgacaagctggcatctacttgtcacattttgttcccttcatttggcactcaaaatgagattcttcgagcacaaggcttttgagcagaaagccgtagttgg |
43085420 |
T |
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| Q |
122 |
atttggaattctaaatggaatctcgattgggttgttaaatttgagtctgggtttcaattctgttggattcta |
193 |
Q |
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| T |
43085419 |
atttgggattttaaatggaatctcaattggacttttaaatttgagcctagggttcaattctgtcggcttcta |
43085348 |
T |
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