View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1732_high_5 (Length: 486)

Name: NF1732_high_5
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1732_high_5
NF1732_high_5
[»] chr5 (15 HSPs)
chr5 (17-257)||(32075532-32075767)
chr5 (17-160)||(31005338-31005481)
chr5 (258-324)||(1396153-1396219)
chr5 (259-324)||(20655049-20655114)
chr5 (257-324)||(2398940-2399007)
chr5 (257-324)||(10729440-10729507)
chr5 (257-324)||(34107336-34107403)
chr5 (258-324)||(16526305-16526371)
chr5 (266-324)||(33375928-33375986)
chr5 (258-324)||(38246864-38246930)
chr5 (259-324)||(20874852-20874917)
chr5 (271-324)||(25099248-25099301)
chr5 (271-324)||(25158338-25158391)
chr5 (259-324)||(34110816-34110881)
chr5 (259-324)||(40177205-40177270)
[»] chr4 (17 HSPs)
chr4 (271-462)||(22289967-22290157)
chr4 (274-466)||(33690278-33690471)
chr4 (257-324)||(16904950-16905017)
chr4 (258-310)||(18209689-18209741)
chr4 (257-324)||(44376077-44376144)
chr4 (261-324)||(46256198-46256261)
chr4 (257-324)||(52434788-52434855)
chr4 (257-299)||(35760770-35760812)
chr4 (258-324)||(39058356-39058422)
chr4 (258-324)||(47142799-47142865)
chr4 (259-324)||(12090459-12090524)
chr4 (259-324)||(30824922-30824987)
chr4 (258-299)||(31965968-31966009)
chr4 (259-324)||(33139471-33139536)
chr4 (259-324)||(37590804-37590869)
chr4 (259-324)||(37651830-37651895)
chr4 (258-299)||(53143261-53143302)
[»] chr6 (12 HSPs)
chr6 (258-433)||(15432336-15432511)
chr6 (258-324)||(1405562-1405628)
chr6 (258-324)||(3593057-3593123)
chr6 (259-324)||(13533931-13533996)
chr6 (258-310)||(162668-162720)
chr6 (258-324)||(2266940-2267006)
chr6 (258-324)||(12597264-12597330)
chr6 (271-324)||(6300721-6300774)
chr6 (271-324)||(6307531-6307584)
chr6 (259-324)||(33646106-33646171)
chr6 (259-299)||(8539742-8539782)
chr6 (259-299)||(28099597-28099637)
[»] chr7 (17 HSPs)
chr7 (283-408)||(21680989-21681114)
chr7 (257-404)||(21651462-21651609)
chr7 (274-459)||(21713499-21713688)
chr7 (258-324)||(16376544-16376610)
chr7 (384-462)||(40674298-40674376)
chr7 (259-324)||(13786334-13786399)
chr7 (256-324)||(42242151-42242219)
chr7 (257-324)||(21804570-21804637)
chr7 (257-324)||(27903415-27903482)
chr7 (257-324)||(33916945-33917012)
chr7 (384-462)||(21314280-21314358)
chr7 (258-324)||(40969055-40969121)
chr7 (259-324)||(21670145-21670210)
chr7 (258-299)||(31373645-31373686)
chr7 (257-326)||(32661031-32661100)
chr7 (259-324)||(38163339-38163404)
chr7 (259-299)||(21342012-21342052)
[»] scaffold0019 (2 HSPs)
scaffold0019 (271-443)||(177839-178010)
scaffold0019 (283-331)||(149046-149094)
[»] chr8 (13 HSPs)
chr8 (257-324)||(28583019-28583086)
chr8 (258-324)||(11725354-11725420)
chr8 (258-324)||(39997855-39997921)
chr8 (384-457)||(18850765-18850838)
chr8 (256-324)||(32110858-32110926)
chr8 (257-324)||(18175545-18175612)
chr8 (258-324)||(995814-995880)
chr8 (258-324)||(10478101-10478167)
chr8 (258-324)||(30473883-30473949)
chr8 (259-324)||(6299020-6299085)
chr8 (259-324)||(15961296-15961361)
chr8 (259-324)||(24409040-24409105)
chr8 (259-299)||(23353622-23353662)
[»] chr3 (16 HSPs)
chr3 (257-324)||(6460166-6460233)
chr3 (258-324)||(36076453-36076519)
chr3 (259-324)||(4584434-4584499)
chr3 (259-324)||(26948962-26949027)
chr3 (257-324)||(38653925-38653992)
chr3 (257-299)||(5561551-5561593)
chr3 (258-324)||(12264364-12264430)
chr3 (258-324)||(43363610-43363676)
chr3 (259-324)||(1941720-1941785)
chr3 (259-324)||(3898586-3898651)
chr3 (259-324)||(34121519-34121584)
chr3 (259-324)||(49672726-49672791)
chr3 (259-299)||(21098493-21098533)
chr3 (259-299)||(40014653-40014693)
chr3 (391-462)||(46921552-46921624)
chr3 (256-324)||(49506346-49506414)
[»] chr2 (8 HSPs)
chr2 (258-324)||(8700425-8700491)
chr2 (258-324)||(19596362-19596428)
chr2 (257-324)||(18351715-18351782)
chr2 (257-324)||(27944794-27944861)
chr2 (258-324)||(6120716-6120782)
chr2 (258-299)||(20545014-20545055)
chr2 (259-324)||(41664674-41664739)
chr2 (259-324)||(44902245-44902310)
[»] chr1 (12 HSPs)
chr1 (259-324)||(1231960-1232025)
chr1 (257-299)||(9216220-9216262)
chr1 (258-324)||(34888685-34888751)
chr1 (266-324)||(35614231-35614289)
chr1 (259-324)||(4266545-4266610)
chr1 (259-324)||(18706509-18706574)
chr1 (258-299)||(18855232-18855273)
chr1 (259-324)||(29942182-29942247)
chr1 (259-324)||(31018200-31018265)
chr1 (259-324)||(38913747-38913812)
chr1 (259-299)||(2951366-2951406)
chr1 (258-326)||(29387886-29387954)
[»] scaffold0515 (1 HSPs)
scaffold0515 (259-299)||(6061-6101)
[»] scaffold0306 (1 HSPs)
scaffold0306 (259-299)||(6071-6111)
[»] scaffold0031 (1 HSPs)
scaffold0031 (258-324)||(46438-46504)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 32075532 - 32075767
Alignment:
Q  17 gtgctttgtgaatccattcaaaaccttttaaaaaatattgcatcatttgcttgcttcggttactatcatcgtttagagcgaaattagctaggcgcgttgg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  32075532 gtgctttgtgaatccattcaaaaccttttaaaaaatattgcatcatttgcttgcttcggttactatcatcgtttagagcgaaatcagctaggcgcgttga 32075631  T
Q  117 cgaaattccaggaatataacatacacgtttgtcaccattttctgtcatacacaatttagttaatatcacaaaatttcacaattagataagaaaaccatgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32075632 cgaaattccaggaatataacatacacgtttgtcaccattttctgtcatacacaatttagttaatatcacaaaatttcacaattagataagaaaaccatgc 32075731  T
Q  217 attttttattttatttaagatcatctacaacattgtgaggt 257  Q
    |||     |||||||||||||||||||||||||||||||||    
T  32075732 att-----ttttatttaagatcatctacaacattgtgaggt 32075767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 31005481 - 31005338
Alignment:
Q  17 gtgctttgtgaatccattcaaaaccttttaaaaaatattgcatcatttgcttgcttcggttactatcatcgtttagagcgaaattagctaggcgcgttgg 116  Q
    |||||||||||||||||| ||||||||| | |     |||||||||| ||||||||||| | |||||||| ||||||| |||||  |||||||||||||     
T  31005481 gtgctttgtgaatccattgaaaacctttcatagtcatttgcatcattcgcttgcttcggctgctatcatcttttagagggaaatcggctaggcgcgttga 31005382  T
Q  117 cgaaattccaggaatataacatacacgtttgtcaccattttctg 160  Q
     ||||||||||||||||||| || |||||  |||||||||||||    
T  31005381 ggaaattccaggaatataacttatacgttcatcaccattttctg 31005338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 1396219 - 1396153
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||| |||||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  1396219 aactatattttccacccgtgctgccgcacgggtcatatacattgcagatgtagcagacaaaaacaaa 1396153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 20655049 - 20655114
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  20655049 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 20655114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 2398940 - 2399007
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  2398940 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2399007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 10729440 - 10729507
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  10729440 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10729507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 34107336 - 34107403
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34107336 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34107403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 16526305 - 16526371
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  16526305 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 16526371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 33375986 - 33375928
Alignment:
Q  266 tttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  33375986 tttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 33375928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 38246864 - 38246930
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38246864 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38246930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 20874917 - 20874852
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  20874917 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 20874852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 25099248 - 25099301
Alignment:
Q  271 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  25099248 acccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25099301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 25158338 - 25158391
Alignment:
Q  271 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  25158338 acccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25158391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 34110881 - 34110816
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34110881 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 40177270 - 40177205
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  40177270 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 40177205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 271 - 462
Target Start/End: Original strand, 22289967 - 22290157
Alignment:
Q  271 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaata 370  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||    
T  22289967 acccgtgctgccgcacgagtcatatacattgaaaatgtagaaggcaaaaacaaaatgacatattgcatacc-atcttaaaatcttaacattatactaata 22290065  T
Q  371 aatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 462  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22290066 aatacaattatatttgtatttttttatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaaaaccatc 22290157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 466
Target Start/End: Complemental strand, 33690471 - 33690278
Alignment:
Q  274 cgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaat 373  Q
    |||||||| ||| | |||||||| ||||||||||||| ||| |||||||||||||||| ||| ||||| | |||||||  |||| |||||  |||| |||    
T  33690471 cgtgctgctgcaggagtcatatatatcgaaaatgtagtaggtaaaaacaaaatgacat-ttatataccaagcttaaaactttaacgttatgataattaat 33690373  T
Q  374 acaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagt--actatcaatgcaaacaccatcctca 466  Q
     |||||||||||||||   ||||||| || ||||||  ||||  ||||||||||||||| | ||||||  |||||||||||||| | ||||||||    
T  33690372 gcaattatatttgaaggaattcatgtttatacattgcagaaatattctttgaaaactacgtttgaagtacactatcaatgcaaagatcatcctca 33690278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 16904950 - 16905017
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  16904950 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16905017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 18209741 - 18209689
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtag 310  Q
    ||||||| |||| ||||||||||| |||||||||||||||||  |||||||||    
T  18209741 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 18209689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 44376077 - 44376144
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||||  || ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  44376077 taactagatcgtccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 44376144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 46256261 - 46256198
Alignment:
Q  261 tagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  46256261 tagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 46256198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 52434855 - 52434788
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  52434855 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 52434788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 35760812 - 35760770
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  35760812 taactagattttccacccgtgctgccgcacgagtcatatacat 35760770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 39058356 - 39058422
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||||||| ||| ||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  39058356 aactagattttccacctgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 39058422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 47142799 - 47142865
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| |||| |||||||||||| | | |||||| || ||||||||||    
T  47142799 aactagactttccacccgtgctgccgcactggtcatatacattgtagatgtagtagacaaaaacaaa 47142865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 12090459 - 12090524
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12090459 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12090524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 30824922 - 30824987
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  30824922 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30824987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 31965968 - 31966009
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  31965968 aactagactttccacccgtgctgccgcacgggtcatatacat 31966009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 33139471 - 33139536
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33139471 actagactttccacccgtgctgccgcacgggtcatatacattgtagatttagtagacaaaaacaaa 33139536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 37590804 - 37590869
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||| ||||    
T  37590804 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaatcaaa 37590869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 37651895 - 37651830
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  37651895 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 37651830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 53143261 - 53143302
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||||||||  ||||||||||| |||||||||||||||||    
T  53143261 aactagatttttcacccgtgctgccgcacgggtcatatacat 53143302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 258 - 433
Target Start/End: Original strand, 15432336 - 15432511
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaa 357  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  15432336 aactagactttctacccgtgcggccgcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaagtgacatattacatacccaacttaaaatcttaa 15432435  T
Q  358 tgttatactaataaatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactaca 433  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  15432436 tgttatcctaataaatacaattatattggaagtttttcatgtctacacatcgtggaaagtttctttgaaaattaca 15432511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 1405562 - 1405628
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  1405562 aactagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 1405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 3593123 - 3593057
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  3593123 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 3593057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 13533996 - 13533931
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  13533996 actagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 13533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 162668 - 162720
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtag 310  Q
    ||||||| |||| ||||||||||| |||||||||||||||||  |||||||||    
T  162668 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 162720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 2267006 - 2266940
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  2267006 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 12597264 - 12597330
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12597264 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12597330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 6300721 - 6300774
Alignment:
Q  271 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||||| ||||||||||||||||| | | || ||| |||||||||||||    
T  6300721 acccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaa 6300774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 6307531 - 6307584
Alignment:
Q  271 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||||| ||||||||||||||||| | | || ||| |||||||||||||    
T  6307531 acccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaa 6307584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 33646171 - 33646106
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33646171 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33646106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 8539782 - 8539742
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  8539782 actagactttccacccgtgctgccgcacgggtcatatacat 8539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 28099597 - 28099637
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  28099597 actagactttccacccgtgctgccgcacgggtcatatacat 28099637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 283 - 408
Target Start/End: Complemental strand, 21681114 - 21680989
Alignment:
Q  283 gcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaatacaattata 382  Q
    ||||||||||||||||||| |||||||| || |||||| ||||| | |||  ||||||||| |||| ||| |||||||||||  ||||||||||||||||    
T  21681114 gcacgggtcatatacatcgtaaatgtagtagacaaaaataaaattatatagcacatacccaacttataattttaatgttataagaataaatacaattata 21681015  T
Q  383 tttgaagtttttcatgtctacacatt 408  Q
    |||||||||| |||||| ||||||||    
T  21681014 tttgaagtttctcatgtttacacatt 21680989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 404
Target Start/End: Complemental strand, 21651609 - 21651462
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatctta 356  Q
    |||||||||  |||||||||| | |  || ||||||||||||| | ||||| |  || || || |||||| | ||| ||| |||||| |||| ||| |||    
T  21651609 taactagatggtctacccgtgatacaacatgggtcatatacattgtaaatgcaatagacagaagcaaaattagatagtacttacccaacttataatttta 21651510  T
Q  357 atgttatactaataaatacaattatatttgaagtttttcatgtctaca 404  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  21651509 atgttataataataaatacaattatatttgaagtttctcatgtttaca 21651462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 274 - 459
Target Start/End: Complemental strand, 21713688 - 21713499
Alignment:
Q  274 cgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaat 373  Q
    |||||| | ||| |||||||||||| || | |||||| ||  |||| |||||| | ||| |||||||| || ||| ||| ||||||||||| ||||||||    
T  21713688 cgtgctaccgcatgggtcatatacaccgtagatgtagtagataaaagcaaaattatatagtacataccaattttataattttaatgttataataataaat 21713589  T
Q  374 aca--attatatttgaagtttttcatgtctacacattgt--ggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacacc 459  Q
    |||  ||||||||||||||||  ||||| |||||||| |  | ||| |||||||  | |||||||   ||||||||| ||||||||||||    
T  21713588 acaatattatatttgaagtttcccatgtttacacattcttcgaaaaatttctttatacactacattcaaagtactataaatgcaaacacc 21713499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 16376544 - 16376610
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  16376544 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16376610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 462
Target Start/End: Original strand, 40674298 - 40674376
Alignment:
Q  384 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 462  Q
    |||||||||||| ||||||| ||||  ||||| ||||||| || |||||||  |||| || ||||||||||||||||||    
T  40674298 ttgaagtttttcgtgtctacgcatttcggaaaatttctttaaacactacattcgaagaaccatcaatgcaaacaccatc 40674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 13786399 - 13786334
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  13786399 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 13786334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 42242151 - 42242219
Alignment:
Q  256 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  42242151 gtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 42242219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 21804570 - 21804637
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  21804570 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 21804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 27903415 - 27903482
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| |||||||||||||| || | | |||||| || ||||||||||    
T  27903415 taactagactttccacccgtgctgccgcacgggtcatatatattgtagatgtagtagacaaaaacaaa 27903482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 33916945 - 33917012
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33916945 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33917012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 462
Target Start/End: Original strand, 21314280 - 21314358
Alignment:
Q  384 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 462  Q
    ||||| |||||| ||||||| ||||  | ||| ||||||| || |||||||  |||| |||||||||||||||||||||    
T  21314280 ttgaaatttttcgtgtctacgcatttcgaaaaatttctttaaacactacattcgaagaactatcaatgcaaacaccatc 21314358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 40969121 - 40969055
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || || |||||||    
T  40969121 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacacaaacaaa 40969055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 21670210 - 21670145
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| |||| |||||||||||| | | |||||| || ||||||||||    
T  21670210 actagactttccacccgtgctgccgcacaggtcatatacattgtagatgtagtagacaaaaacaaa 21670145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 31373686 - 31373645
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  31373686 aactagactttccacccgtgctgccgcacgggtcatatacat 31373645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 32661100 - 32661031
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaat 326  Q
    |||||||||  |||||||||||||| ||||| ||||||||||| | || ||||| || ||||| ||||||    
T  32661100 taactagatcgtctacccgtgctgccgcacgagtcatatacattgtaagtgtagtagacaaaagcaaaat 32661031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 38163339 - 38163404
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38163339 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 21342052 - 21342012
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  21342052 actagactttccacccgtgctgccgcacgggtcatatacat 21342012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 443
Target Start/End: Original strand, 177839 - 178010
Alignment:
Q  271 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaata 370  Q
    |||||||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||  | |||| ||  |||| || ||  ||||     
T  177839 acccgtgctgccacacgggtcatatatatcgaaaatgtagcaggcaaaaacaaaatgacat-ttatatacgaagcttagaactttaacgtcatgataatt 177937  T
Q  371 aatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtac 443  Q
    ||| ||||||||||||| |   ||||||| || ||||||  |||| ||| |||||||||||| | ||||||||    
T  177938 aatgcaattatatttgagggaattcatgtttatacattgcagaaaatttgtttgaaaactacgtttgaagtac 178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 149046 - 149094
Alignment:
Q  283 gcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacat 331  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  149046 gcacgggtcatatatatcgaaaatgtagcaggcgaaaacaaaatgacat 149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 28583086 - 28583019
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  28583086 taactagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 28583019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 11725420 - 11725354
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  11725420 aactagactttccacccgtgctgctgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 11725354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 39997921 - 39997855
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  39997921 aactagaatttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 39997855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 18850765 - 18850838
Alignment:
Q  384 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaaca 457  Q
    ||||||| ||| |||||||| |||| |||||| ||||||| || |||||||  |||| ||||||||||||||||    
T  18850765 ttgaagtcttttatgtctacgcattttggaaaatttctttaaacactacattcgaagaactatcaatgcaaaca 18850838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 32110858 - 32110926
Alignment:
Q  256 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  32110858 gtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 32110926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 18175612 - 18175545
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  18175612 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 995814 - 995880
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  995814 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 995880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 10478167 - 10478101
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  10478167 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10478101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 30473883 - 30473949
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  30473883 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30473949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 6299020 - 6299085
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  6299020 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6299085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 15961361 - 15961296
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  15961361 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 15961296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 24409105 - 24409040
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||||||||||| ||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  24409105 actagactttctacccgtgttgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 24409040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 23353622 - 23353662
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  23353622 actagactttccacccgtgctgccgcacgggtcatatacat 23353662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 6460166 - 6460233
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  6460166 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 6460233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 36076453 - 36076519
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  36076453 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 36076519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 4584434 - 4584499
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  4584434 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 4584499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 26949027 - 26948962
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  26949027 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 26948962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 38653925 - 38653992
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38653925 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38653992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 5561551 - 5561593
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||||||  |||||||||||||| |||||||||||||||||    
T  5561551 taactagatcgtctacccgtgctgccgcacgggtcatatacat 5561593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 12264430 - 12264364
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12264430 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 43363610 - 43363676
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  43363610 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 43363676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 1941720 - 1941785
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  1941720 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 1941785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 3898651 - 3898586
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  3898651 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 3898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 34121584 - 34121519
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34121584 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34121519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 49672791 - 49672726
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  49672791 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49672726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 21098533 - 21098493
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  21098533 actagactttccacccgtgctgccgcacgggtcatatacat 21098493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 40014653 - 40014693
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  40014653 actagactttccacccgtgctgccgcacgggtcatatacat 40014693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 46921552 - 46921624
Alignment:
Q  391 ttttcatgtctacacattgtggaaagtttctttgaaaact-acatctgaagtactatcaatgcaaacaccatc 462  Q
    ||||| |||||||||||| |||||  ||| ||| || ||| ||||  ||||||||||||||||||||||||||    
T  46921552 ttttcgtgtctacacattttggaatttttttttaaacacttacattcgaagtactatcaatgcaaacaccatc 46921624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 49506346 - 49506414
Alignment:
Q  256 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||||| |||| |||||| |||| ||||||||||||||||| | | || ||| || ||||||||||    
T  49506346 gtaactagactttccacccgtactgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49506414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 8700491 - 8700425
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  8700491 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 8700425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 19596362 - 19596428
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  19596362 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 19596428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 18351782 - 18351715
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  18351782 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 27944794 - 27944861
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  27944794 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 27944861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 6120782 - 6120716
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  6120782 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6120716  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 20545055 - 20545014
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  20545055 aactagactttccacccgtgctgccgcacgggtcatatacat 20545014  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 41664739 - 41664674
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  41664739 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 41664674  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 44902310 - 44902245
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  44902310 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 44902245  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 1232025 - 1231960
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | |||| ||| || ||||||||||    
T  1232025 actagactttccacccgtgctgccgcacgggtcatatacattgtaaatatagtagacaaaaacaaa 1231960  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 9216262 - 9216220
Alignment:
Q  257 taactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||||| |||| ||||||||||| |||||||||||||||||    
T  9216262 taactagactttccacccgtgctgccgcacgggtcatatacat 9216220  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 34888685 - 34888751
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34888685 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34888751  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 35614289 - 35614231
Alignment:
Q  266 tttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||| ||||||||| | ||||||||||||||||| | |||||||| || ||||||||||    
T  35614289 tttccacccgtgctaccgcacgggtcatatacattgtaaatgtagtagacaaaaacaaa 35614231  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 4266610 - 4266545
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  4266610 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 4266545  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 18706509 - 18706574
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||| ||||||||||| | | |||||| || ||||||||||    
T  18706509 actagactttccacccgtgctgccgcacgagtcatatacattgtagatgtagtagacaaaaacaaa 18706574  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 18855232 - 18855273
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  18855232 aactagactttccacccgtgctgccgcacgggtcatatacat 18855273  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 29942247 - 29942182
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  29942247 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 29942182  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 31018200 - 31018265
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  31018200 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 31018265  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 38913747 - 38913812
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38913747 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38913812  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 2951366 - 2951406
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  2951366 actagactttccacccgtgctgccgcacgggtcatatacat 2951406  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 29387886 - 29387954
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaat 326  Q
    ||||||||  || |||||| |||| ||||||||||||||||| | || ||||| || ||||||||||||    
T  29387886 aactagatcgtccacccgtactgccgcacgggtcatatacattgtaagtgtagtagacaaaaacaaaat 29387954  T

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Target: scaffold0515 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 6061 - 6101
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6061 actagattttccacccgtgctgccgcacgggtcatatacat 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 6071 - 6111
Alignment:
Q  259 actagattttctacccgtgctgcggcacgggtcatatacat 299  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6071 actagattttccacccgtgctgccgcacgggtcatatacat 6111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 46504 - 46438
Alignment:
Q  258 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 324  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  46504 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 46438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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