View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_1 (Length: 547)
Name: NF1732_low_1
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 533
Target Start/End: Complemental strand, 631461 - 630939
Alignment:
| Q |
11 |
agaacctgtgcaatgtcaaaagtttagaaggacaatgattgactatgatattatcagtttgttatcattgtttttaaatatacatatttaatctattatc |
110 |
Q |
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| T |
631461 |
agaacctgtgcaatgtcaaaagtttagaaggacgatgattgactatgatattatcagtttgttatcattgtttttaaatatacatatttaatctattatc |
631362 |
T |
|
| Q |
111 |
atgctatttccaccggttactgtatactcattatgctataacttatttgtttatatttcacttggtaggatgtaaatgacacaccttacaaaaatgcaaa |
210 |
Q |
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| T |
631361 |
atgctatttccaccggttactatatactcattatgctataacttatttgtttatatttcacttggtaggatgtaaatgacacaccttacaaaaatgcaaa |
631262 |
T |
|
| Q |
211 |
atatattttaaccttgggagctacacgctcaagtttatttggctttaatttatattgtttatttattcatgaattatactcttctttaccctttatnnnn |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
631261 |
atatattttaaccttgggagctacacgctcaagtttatttggctttaatttatattgtttatttattcatgaattatactcttctttaccctttataaaa |
631162 |
T |
|
| Q |
311 |
nnnnnngtcgtcttctttacctgatggtttgaaacggggtttactgacccgatatatgacctgatcgggtctagtattatcacaatgaaattcagcgatt |
410 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
631161 |
aaaaaagtcgtcttctttacctgatggtctgaaacggggtttactgacccgatatatgacctgatcgggtttagtattatcacaatgaaattcagcgatt |
631062 |
T |
|
| Q |
411 |
tttgcatagtttttattggaattgaaagaaaagttgaaatttgataattaaattattcacacaagcgaaaataatatagctactaaaaggtttttcggta |
510 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
631061 |
tttgcatagtttttattggaattgaaaggaaagttgaaatttgataattaaattattcacacaagcgaaaataatatagctactaaaaggtttttcgata |
630962 |
T |
|
| Q |
511 |
accattttgaaacatgaattcaa |
533 |
Q |
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||||||||||||||||||||||| |
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| T |
630961 |
accattttgaaacatgaattcaa |
630939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 30338659 - 30338620
Alignment:
| Q |
138 |
tcattatgctataacttatttgtttatatttcacttggta |
177 |
Q |
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|||||||||||||||||||| |||||||||||| |||||| |
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| T |
30338659 |
tcattatgctataacttattcgtttatatttcatttggta |
30338620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 9795139 - 9795190
Alignment:
| Q |
125 |
ggttactgtatactcattatgctataacttatttgtttatatttcacttggt |
176 |
Q |
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||||||| || | |||||||||||||||||||| |||||||||||| ||||| |
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| T |
9795139 |
ggttactatacattcattatgctataacttattcgtttatatttcatttggt |
9795190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 4783319 - 4783383
Alignment:
| Q |
106 |
ttatcatgctatttccaccggttactgtatactcattatgctataacttatttgtttatatttca |
170 |
Q |
| |
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|||||||||||||| | ||||| |||| | |||||||||||||||||||| | |||||||||| |
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| T |
4783319 |
ttatcatgctatttttattggttattgtacattcattatgctataacttattcgattatatttca |
4783383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 26666094 - 26666146
Alignment:
| Q |
125 |
ggttactgtatactcattatgctataacttatttgtttatatttcacttggta |
177 |
Q |
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||||||| || | |||||||| ||||||||||| |||||||||||| |||||| |
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| T |
26666094 |
ggttactatacattcattatgttataacttattcgtttatatttcatttggta |
26666146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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