View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_14 (Length: 312)
Name: NF1732_low_14
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 1854731 - 1854530
Alignment:
| Q |
1 |
ctttgttggaaatctaatcgttctacacnnnnnnnnaaaggaaatagtagcaaacatttttcattactcacaatctaattgaaaaatcataaggtatata |
100 |
Q |
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| T |
1854731 |
ctttgttggaaatctaatcgtactacacttttttttaa-ggaaatagtagcaaacattttttattactcacaatctaattgaaaaatcataaggtatata |
1854633 |
T |
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| Q |
101 |
ta----cacattgtgctcttttaatttttctttaaattattcctttgctttttgatttgccactacaaaataaaagcaatactacaattccctcacaaat |
196 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1854632 |
tatatacacattgtgctcttttaatttttctttaaattattcctttgctttttgatttgccactacaaaataaaagcaatactacaattccctcacaaat |
1854533 |
T |
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| Q |
197 |
ccc |
199 |
Q |
| |
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||| |
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| T |
1854532 |
ccc |
1854530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 1854500 - 1854425
Alignment:
| Q |
228 |
cttgataattcatcttatcatatttcaatatttactaagaaactttgtccccttttttaaagtagatgatattctt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1854500 |
cttgataattcatcttatcatatttcaatatttactaagaaactttgtccccttttttaaagtagatgatattctt |
1854425 |
T |
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