View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_16 (Length: 301)
Name: NF1732_low_16
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 36147392 - 36147116
Alignment:
| Q |
11 |
acaatatatatgatagatatacatataagagaaatgcgatannnnnnnataatagatgttattataggtttatggtataataaatttttgaaatatgtgt |
110 |
Q |
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| T |
36147392 |
acaatatatatgatagatatacatataagagaaatgcgatatttttttataatagatgttattataggtttatggtataataaatttttgaaatatgtgt |
36147293 |
T |
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| Q |
111 |
aaaaagtagtatctcta---tatggaatactctatatatagaaccactgaatagctgaagcatgactacgatatattgcnnnnnnngaacaacctgtacg |
207 |
Q |
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| T |
36147292 |
aaaaagtagtatctctaatatatggaatactctatatatagaaccactgaatagctgaagcatgactacgatatattgcaaaaaaagaacaacctgtacg |
36147193 |
T |
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| Q |
208 |
tgtatctacataaactcctttttactcatgtaaccaaaattatctaattctaatgatgtgatttttatgccaataat |
284 |
Q |
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| T |
36147192 |
tgtatctacataaactcctttttactcatgtaaccaaaattatctaattctaatgatgtgatttttatgccaataat |
36147116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 273
Target Start/End: Complemental strand, 36080212 - 36080026
Alignment:
| Q |
89 |
aataaatttttgaaatatgtgtaaaaagtagtatctcta--------tatggaatactctatatatagaaccactgaatagctgaagcatgactacgata |
180 |
Q |
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| T |
36080212 |
aataaattttttaaatatgtgtaaaaagttgtatctctagctagctatatgggatactctat---ta-aaccactgaata----aaccatgactacgata |
36080121 |
T |
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| Q |
181 |
tattgcnnnnnnngaacaacctgtacgtgtatctacataaact--cctttttactcatgtaaccaaaattatctaattctaatgatgtgattttt |
273 |
Q |
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| T |
36080120 |
tattgcaaaaattgaacaacttgtgcatctatctacataaaatgatttttttactcgtgtaaccaaaattatctaattctaatgatgtgattttt |
36080026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 26529738 - 26529815
Alignment:
| Q |
197 |
caacctgtacgtgtatctacataaactccttttt-actcatgtaaccaaaattatctaattctaatgatgtgattttt |
273 |
Q |
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| T |
26529738 |
caacttgtatgtgtatctatataaaatgctttttcactcatgtaaccaaaattatataattctaatgatgtgattttt |
26529815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 26529618 - 26529669
Alignment:
| Q |
89 |
aataaatttttgaaatatgt-gtaaaaagtagtatctctatatggaatactc |
139 |
Q |
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| T |
26529618 |
aataaatttttgaaatatgtggtaaaaagcaatatctctatatgggatactc |
26529669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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