View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_22 (Length: 262)
Name: NF1732_low_22
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 13852512 - 13852263
Alignment:
| Q |
1 |
tcggctgtgaaccccatttagtgacaagatcatcaaagcttgattctgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatcatg |
100 |
Q |
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| T |
13852512 |
tcggctgtgaaccccatttagtgacaagatcatcaaagcttgattctgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatcatg |
13852413 |
T |
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| Q |
101 |
aacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatgttgctactcttccatcttgccagtat |
200 |
Q |
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| T |
13852412 |
aacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatgttgctactcttccatcttgccagtat |
13852313 |
T |
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| Q |
201 |
aaagaagcaccgcaagataataatactccagctttattaagcacaggttc |
250 |
Q |
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| T |
13852312 |
aaagaagcaccgcaagataataatactccagctttattaagcactggttc |
13852263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 13856358 - 13856148
Alignment:
| Q |
34 |
caaagcttgattctgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagt |
133 |
Q |
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| T |
13856358 |
caaagcttgattttgaagctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagt |
13856259 |
T |
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| Q |
134 |
tatatccattgttaggttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataaagaagcaccgcaagataataatactccagct |
233 |
Q |
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| T |
13856258 |
tatatccattgttaagttagataagaaagagcaatagaatgttgctactcttccatcttcccaatataaagaagcaccacaagataataatactccagct |
13856159 |
T |
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| Q |
234 |
ttattaagcac |
244 |
Q |
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| T |
13856158 |
ttattaagcac |
13856148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 43865385 - 43865492
Alignment:
| Q |
75 |
tcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatg |
174 |
Q |
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||||||||||| || |||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| | ||| | |||||||| |||| |||| |
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| T |
43865385 |
tcttcataaggaataataaaatcatgaacatgaagagttccttttgttccaatagctgttatatccattgtcaagtttgccaagaaagaacaatgaaatg |
43865484 |
T |
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| Q |
175 |
ttgctact |
182 |
Q |
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| T |
43865485 |
tagctact |
43865492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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