View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1732_low_24 (Length: 256)

Name: NF1732_low_24
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1732_low_24
NF1732_low_24
[»] chr6 (8 HSPs)
chr6 (18-171)||(18151158-18151311)
chr6 (171-241)||(22958658-22958728)
chr6 (171-241)||(23829664-23829734)
chr6 (171-242)||(18140366-18140434)
chr6 (175-242)||(23841884-23841948)
chr6 (173-242)||(12744452-12744520)
chr6 (39-92)||(22993096-22993149)
chr6 (39-92)||(23795249-23795302)
[»] chr8 (5 HSPs)
chr8 (171-246)||(23644770-23644844)
chr8 (173-242)||(33879701-33879769)
chr8 (173-239)||(23946245-23946310)
chr8 (212-241)||(22173091-22173120)
chr8 (174-242)||(39659046-39659113)
[»] scaffold0520 (1 HSPs)
scaffold0520 (179-242)||(11495-11557)
[»] chr5 (2 HSPs)
chr5 (173-240)||(22939524-22939590)
chr5 (173-242)||(2454242-2454310)
[»] chr3 (4 HSPs)
chr3 (171-242)||(47052501-47052570)
chr3 (173-242)||(10960850-10960918)
chr3 (173-242)||(10964357-10964425)
chr3 (173-238)||(9155763-9155827)
[»] scaffold0043 (1 HSPs)
scaffold0043 (173-242)||(12241-12309)
[»] scaffold1755 (1 HSPs)
scaffold1755 (173-242)||(1079-1147)
[»] scaffold0083 (1 HSPs)
scaffold0083 (173-241)||(26923-26990)
[»] chr4 (2 HSPs)
chr4 (173-242)||(26062016-26062084)
chr4 (173-239)||(5671521-5671586)
[»] chr2 (1 HSPs)
chr2 (182-239)||(24236028-24236084)
[»] chr1 (1 HSPs)
chr1 (173-235)||(49717339-49717400)
[»] chr7 (1 HSPs)
chr7 (173-239)||(45289580-45289645)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 18151311 - 18151158
Alignment:
Q  18 gtttgttgaaaatttaacaatatccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataaccaccagatagagggaagagatgtat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18151311 gtttgttgaaaatttaacaatatccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataaccaccagatagagggaagagatgtat 18151212  T
Q  118 caaaatttccgttatgtgacgcaacaccggaaaaagggtaatatacataaacat 171  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18151211 taaaatttccgttatgtgacgcaacaccggaaaaagggtaatatacataaacat 18151158  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 22958728 - 22958658
Alignment:
Q  171 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacccc 241  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22958728 tagaattcgaactctcccacattagagaaaggacatgcacccttctgcacacgagtgatttccttaacccc 22958658  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 23829664 - 23829734
Alignment:
Q  171 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacccc 241  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23829664 tagaattcgaactctcccacattagagaaaggacatgcacccttctgcacacgagtgatttccttaacccc 23829734  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 18140366 - 18140434
Alignment:
Q  171 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    |||||||| |||||||||||| | ||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  18140366 tagaatttgaactctcccaccgttgagaa-ggacatgcacccttctgcac--gagtgatttccttaaccccc 18140434  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 23841884 - 23841948
Alignment:
Q  175 atttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    |||| |||||||||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  23841884 atttgaactctcccacctttgagaa-ggacatgcacccttctgcac--gagtgatttccttaaccccc 23841948  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 12744520 - 12744452
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaaccccc 242  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||||||    
T  12744520 gaatttaaactttcccaccttagagaa-ggacatgca-tctatttgcacaagagtgatttccttaaccccc 12744452  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 22993149 - 22993096
Alignment:
Q  39 atccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataac 92  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||||||| ||||    
T  22993149 atccacaacgactatcctaggtgctccaaaagcacgagccgaaagcattgtaac 22993096  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 23795249 - 23795302
Alignment:
Q  39 atccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataac 92  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||||||| ||||    
T  23795249 atccacaacgactatcctaggtgctccaaaagcacgagccgaaagcattgtaac 23795302  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 23644844 - 23644770
Alignment:
Q  171 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccctttg 246  Q
    |||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||    
T  23644844 tagaatttgaactctcccaccttagagaa-ggacattcacccttctgcacacgagtgatttccttaaccccctttg 23644770  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 33879701 - 33879769
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| |||||||||||||||    
T  33879701 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaaccccc 33879769  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 23946245 - 23946310
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 239  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| ||||||||||||    
T  23946245 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaacc 23946310  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 22173091 - 22173120
Alignment:
Q  212 cttctgcacacgagtgatttccttaacccc 241  Q
    ||||||||||||||||||||||||||||||    
T  22173091 cttctgcacacgagtgatttccttaacccc 22173120  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 39659046 - 39659113
Alignment:
Q  174 aatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    |||||||  |||| ||||||||| ||||||||||||  | | ||||||||||||||||| |||||||||    
T  39659046 aatttaagatctctcaccttaga-aaaggacatgcatccatttgcacacgagtgatttctttaaccccc 39659113  T

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Target: scaffold0520 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 11495 - 11557
Alignment:
Q  179 aaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  11495 aaactctcccaacttagagaa-ggacatgcacccttctgcacacgagtgatttccttaatcccc 11557  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 22939524 - 22939590
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccc 240  Q
    |||||||| |||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||    
T  22939524 gaatttaagctctcccaccttagagaatg-acgtgcacccttctgcacacgagtgatttccttaaccc 22939590  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 2454310 - 2454242
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaaccccc 242  Q
    |||| |||||||||||||||||||| ||||||||||| ||| | |||||| || |||||||||||||||||    
T  2454310 gaatataaactctcccaccttagag-aaggacatgca-tctatttgcacaagaatgatttccttaaccccc 2454242  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 47052570 - 47052501
Alignment:
Q  171 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    |||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  47052570 tagaatttgaactctcccac-ttagagaa-ggacatgcacccttctgcacacgagtgattttcttaaccccc 47052501  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 10960918 - 10960850
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    ||||||||  ||||||||||||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  10960918 gaatttaagatctcccaccttagagaa-ggacatgcatccatctgcacacgagtgatttccttaaccccc 10960850  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 10964425 - 10964357
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    ||||||||  ||||||||||||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  10964425 gaatttaagatctcccaccttagagaa-ggacatgcatccatctgcacacgagtgatttccttaaccccc 10964357  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 9155827 - 9155763
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaac 238  Q
    ||||||||||||||||||||||||  ||||||||||| ||| | |||||| ||||||||||||||||    
T  9155827 gaatttaaactctcccaccttaga-taaggacatgca-tctatttgcacaagagtgatttccttaac 9155763  T

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Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 12309 - 12241
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaaccccc 242  Q
    ||||||||||||||||||||||||| ||||||||||| ||| | |||||| ||||||||||||||||||||    
T  12309 gaatttaaactctcccaccttagag-aaggacatgca-tctatttgcacaagagtgatttccttaaccccc 12241  T

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Target: scaffold1755 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 1147 - 1079
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    |||||||| ||||||||||||||| ||||||||||||| | | ||||||||||| ||||| |||||||||    
T  1147 gaatttaagctctcccaccttaga-aaaggacatgcacccatttgcacacgagttatttctttaaccccc 1079  T

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Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 26990 - 26923
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaacccc 241  Q
    ||||||||||||||||||||||||| ||||||||||| ||| | |||||| |||||||||||||||||||    
T  26990 gaatttaaactctcccaccttagag-aaggacatgca-tctatttgcacaagagtgatttccttaacccc 26923  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 26062016 - 26062084
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 242  Q
    ||||||||  ||||||||||||||||| |||||||||  | |||||||||||||||||||||||| ||||    
T  26062016 gaatttaagatctcccaccttagagaa-ggacatgcatccatctgcacacgagtgatttccttaatcccc 26062084  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 5671586 - 5671521
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 239  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| ||||||||||||    
T  5671586 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaacc 5671521  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 24236084 - 24236028
Alignment:
Q  182 ctctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 239  Q
    ||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||    
T  24236084 ctctcccaccttaaagaa-ggacatgctcccttctgcacacgagtgatttccttaacc 24236028  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 49717400 - 49717339
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttcctt 235  Q
    |||||||| |||| ||||||||||||| ||||||||| || ||| ||||||||||||||||||    
T  49717400 gaatttaagctcttccaccttagagaa-ggacatgcattcatcttcacacgagtgatttcctt 49717339  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 45289580 - 45289645
Alignment:
Q  173 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 239  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| ||||||||||||    
T  45289580 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaacc 45289645  T

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