View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1732_low_25 (Length: 255)
Name: NF1732_low_25
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 12073577 - 12073342
Alignment:
| Q |
10 |
ccagttttgcattacatgtttgtttctcaaattaatagatcaagctggttagggtgtcacatttgatcgggctacgcgaatagatttgatgggaatgtgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12073577 |
ccagttttgcattacatgtttgtttctcaaattaatagatcaagctggttagggtgtcacatttgatcgggctacgcgaatagatttgatgggaatgtgt |
12073478 |
T |
|
| Q |
110 |
actttcgtcatacaatttgatattttgaacagtgtaagccattttggggtatcaaaatacatgctactgttagagtaaagataactttctattttatgtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12073477 |
actttcgtcatacaatttgatattttgaacagtgtaagccattttggggtatcaaaatacatgctactgttagagtaaagataactttctgttttatgtt |
12073378 |
T |
|
| Q |
210 |
attcactttgaaaccatcatgctactttaagtataa |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12073377 |
attcactttgaaaccatcatgctactttaagtataa |
12073342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University