View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_26 (Length: 250)
Name: NF1732_low_26
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 5833770 - 5834007
Alignment:
| Q |
13 |
aaaataagtaagaaaacaaagaaagaaaacgtggtcttacgtagaaatgatgctattccagacccaatagctaggtaaacaaatagcaatgatacctgaa |
112 |
Q |
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| T |
5833770 |
aaaataagtaagaaaacaaagaaagaaaacgtggtcttacgtagaaatgatgctattccagacccaatagctaggtaaacaaatagcaatgatacctgaa |
5833869 |
T |
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| Q |
113 |
atttgaagtgtattaaagaatgctacatattatggtaatgagtgcatgatatgcaatatccattttggtaacaaggatttttgtgtttcttaaccctttt |
212 |
Q |
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| T |
5833870 |
atttgaagtgtattaaagaatgctacatattatggtaatgagtgcatgatatgcaatatccattttggtaacaaggatttttgtgtttcttaaccctttt |
5833969 |
T |
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| Q |
213 |
gagaaaatgactttagtaattcatatttaaactagaaa |
250 |
Q |
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| T |
5833970 |
gagaaaatgactttagtaattcatatttaaactagaaa |
5834007 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 5820822 - 5820772
Alignment:
| Q |
47 |
tcttacgtagaaatgatgctattccagacccaatagctaggtaaacaaata |
97 |
Q |
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| T |
5820822 |
tcttacgtagaaatgatgctattccagatccaacaccaaggtaaataaata |
5820772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 29331475 - 29331667
Alignment:
| Q |
15 |
aataagtaagaaaacaaagaaagaaaacgtggtcttacgtagaaatgatgctattccagacccaatagctaggtaaacaaatagcaatgatacctgaaat |
114 |
Q |
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| T |
29331475 |
aataaataagcaaacaaagtaaaaaagtgtggtcttacgtagaaatgatgttattccagacccaatagccaggtaaacaaatagcaatgatacctgaaat |
29331574 |
T |
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| Q |
115 |
ttgaagtgtattaaagaatgctacatattatggtaatgagtgcatgatatgcaatatccattttggtaacaaggat--ttttgtgtttcttaa |
205 |
Q |
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| T |
29331575 |
ttgaactgtgttaaagaatgtttaatattatggtaattagtgcatgctatgatagatccattttggtaacaagtattcttttgtgtgtcttaa |
29331667 |
T |
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