View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_27 (Length: 247)
Name: NF1732_low_27
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5334243 - 5334473
Alignment:
| Q |
1 |
taaacacagaatttacggcgatgaaacgagggtatttgttgattcattagcgatcggttcaattcaattcctaaaacctgaattgtgtgctgctgctgtt |
100 |
Q |
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| T |
5334243 |
taaacacagaatttacggcgatgaaacgagggtatttgttgattcattagcgatcggttcaattcaattcctaaaacctgaattgtgtgctgctgctgtt |
5334342 |
T |
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| Q |
101 |
gcgctgcaatggcatcatcatcatcattgtcagcgcctaatgtggttttgttcgatgcttttttccgtcgtgccgatttggattgcgacggtcgtgtcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5334343 |
gcgctgcaatggcatcatcatcatcattgtcagcgcctaatgtggttttgttcgatgcttttttccgtcgtgccgatttggattgcgacggtcgtatcag |
5334442 |
T |
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| Q |
201 |
cggcgtcgaagccgtctccttcttccaaggt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5334443 |
cggcgtcgaagccgtctccttcttccaaggt |
5334473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 43470236 - 43470351
Alignment:
| Q |
116 |
catcatcatcattgtcagcgcctaatgtggttttgttcgatgcttttttccgtcgtgccgatttggattgcgacggtcgtgtcagcggcgtcgaagccgt |
215 |
Q |
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||||||| || | ||||||||||||||||| | |||||||||||| |||||||||||||||||||||| | ||||| ||| ||||||| ||||||||||| |
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| T |
43470236 |
catcatcttcgtcgtcagcgcctaatgtggatctgttcgatgcttatttccgtcgtgccgatttggatcgtgacggccgtatcagcggtgtcgaagccgt |
43470335 |
T |
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| Q |
216 |
ctccttcttccaaggt |
231 |
Q |
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||| |||||||||||| |
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| T |
43470336 |
ctctttcttccaaggt |
43470351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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