View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_3 (Length: 493)
Name: NF1732_low_3
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 233 - 455
Target Start/End: Original strand, 8691546 - 8691767
Alignment:
| Q |
233 |
ttttcgagaattggctaattgttttatgaaatttgtaaaattgctaatgaagggcaagtacaagacaaaatattctcaaagattgnnnnnnnaaccaatt |
332 |
Q |
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| T |
8691546 |
ttttagagaattggctaattgttttatgaaatttgtaaaattgctaatgaagg-caagtacaagacaaaatattctcaaagattgtttttttaaccaatt |
8691644 |
T |
|
| Q |
333 |
ggtgcttgactgattggcttcatcatctttctcaatatagaacaatgctttacatggcgacatttgatttaaacttccttctgctacctctattgtatgt |
432 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691645 |
ggtgcttgactgattggcttcatcatcttactcaatatagaacaatgctttacatggcgacatttgatttaaacttccttctgctacctctattgtatgt |
8691744 |
T |
|
| Q |
433 |
ccttggcgataagctaagtactt |
455 |
Q |
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||||||||||||||||||||||| |
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| T |
8691745 |
ccttggcgataagctaagtactt |
8691767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 8691350 - 8691556
Alignment:
| Q |
18 |
gttttgaacctacattggaccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgca |
117 |
Q |
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| T |
8691350 |
gttttgaacctacgttagaccaaaagcttcaattgctagcttttaaaaatcacggtagttttgccttggaaatcccct-agacttgcttttttgcttgca |
8691448 |
T |
|
| Q |
118 |
gactctaacccaaacaagcacttagtgttttt------nnnnnnnngtcaactaaatcgaaccaaactgcatatcttttattttacgaattagataactt |
211 |
Q |
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| T |
8691449 |
gac-ccaacccaaacaagcacttagtgttttttttaaaaaaaaaaagtcaactaaatcaaaccaaactgcatattttttattttacgatttagataactt |
8691547 |
T |
|
| Q |
212 |
ttagagaat |
220 |
Q |
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||||||||| |
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| T |
8691548 |
ttagagaat |
8691556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 13337877 - 13337998
Alignment:
| Q |
19 |
ttttgaacctacattggaccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcag |
118 |
Q |
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||||||||| || |||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||||||| || |
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| T |
13337877 |
ttttgaacccacgttggaccaaaagcttcaattgctaacttttaaaaatcatggtagttttgccttgaaaatcccc-caaacttgcttttttgcttgaag |
13337975 |
T |
|
| Q |
119 |
actctaacccaaacaagcactta |
141 |
Q |
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|||| |||||||||||||||||| |
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| T |
13337976 |
actccaacccaaacaagcactta |
13337998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 36020349 - 36020249
Alignment:
| Q |
38 |
caaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagca |
137 |
Q |
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|||||||||||||||||||||||||||||| || | | |||||| ||| |||||||| ||||||| || ||||||||||| |||| | |||||||||||| |
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| T |
36020349 |
caaaagcttcaattgctagcttttaaaaatcactgcaattttgctttgaaaatcccc-caaacttacttttttgcttgcaaactccatcccaaacaagca |
36020251 |
T |
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| Q |
138 |
ct |
139 |
Q |
| |
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|| |
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|
| T |
36020250 |
ct |
36020249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 3268976 - 3268873
Alignment:
| Q |
37 |
ccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagc |
136 |
Q |
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||||||||| |||||||| |||||||||||| |||| | ||||| |||||||||||| |||||||| | ||||||||||| |||| | ||||||||||| |
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| T |
3268976 |
ccaaaagctccaattgctggcttttaaaaatcacggcaaatttgctttggaaatcccc-caaacttgtttttttgcttgcaaactccatcccaaacaagc |
3268878 |
T |
|
| Q |
137 |
actta |
141 |
Q |
| |
|
||||| |
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|
| T |
3268877 |
actta |
3268873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 26441980 - 26441882
Alignment:
| Q |
38 |
caaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagca |
137 |
Q |
| |
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|||||||| ||||||||||||||||||||| || | | || | | |||||||||||| |||||||||| ||||| ||||| |||| | |||||||||||| |
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| T |
26441980 |
caaaagctccaattgctagcttttaaaaatcactgcaattatactttggaaatcccc-caaacttgcttttttgtttgcaaactccatcccaaacaagca |
26441882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 28040666 - 28040582
Alignment:
| Q |
37 |
ccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactc |
122 |
Q |
| |
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||||||| | ||||||||||||||||||||| | || | |||||| |||||||||||| |||||||||| ||||||||||| |||| |
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| T |
28040666 |
ccaaaagttccaattgctagcttttaaaaatcatggcaattttgctttggaaatcccc-caaacttgcttttttgcttgcaaactc |
28040582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 38482243 - 38482144
Alignment:
| Q |
37 |
ccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagc |
136 |
Q |
| |
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|||||| |||||||||||||||| ||||||| |||||| ||||| ||| |||| | ||||||| | || ||||||||||| ||| ||| |||||||||| |
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| T |
38482243 |
ccaaaaacttcaattgctagcttctaaaaatcacggtaattttgtcttaaaaat-ctctcaaacctacttttttgcttgcaaactttaatccaaacaagc |
38482145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 8035677 - 8035569
Alignment:
| Q |
39 |
aaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagcac |
138 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||| ||||||||| ||| || ||| | |||| || ||||||| |||| |
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| T |
8035677 |
aaaagcttcaaatgctagcttttataaatcacgacggttttgctttgaaaat-cccacaaacttgcaattgtg-ttgtaaactccaaaccaaacaggcac |
8035580 |
T |
|
| Q |
139 |
ttagtgttttt |
149 |
Q |
| |
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||||||||||| |
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|
| T |
8035579 |
ttagtgttttt |
8035569 |
T |
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