View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_30 (Length: 244)
Name: NF1732_low_30
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14282395 - 14282157
Alignment:
| Q |
1 |
tagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcg |
100 |
Q |
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| T |
14282395 |
tagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcg |
14282296 |
T |
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| Q |
101 |
tgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatgggaattc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282295 |
tgggaagagtacttcggtaacaagattcaacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatgggaattc |
14282196 |
T |
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| Q |
201 |
tgggtactgcttcaataactgtatctgttcttacctttg |
239 |
Q |
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| T |
14282195 |
tgggtactgcttcaataactgtagctgttcttacctttg |
14282157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14320544 - 14320306
Alignment:
| Q |
1 |
tagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcg |
100 |
Q |
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|||||||||||| |||||| ||||||||| |||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
14320544 |
tagtaatagtttccagtttaagataatgacgagccgcgattcgaggatgaaggcgacaaacgagttacttaacaacatgcgtgtgattaagtttcaagcg |
14320445 |
T |
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| Q |
101 |
tgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatgggaattc |
200 |
Q |
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| T |
14320444 |
tgggaagagtactttggtaacaaaattcaacagtttcgcgaagctgagcatggatggattgcgaaattcttgtactattttgcagttaacataggagttt |
14320345 |
T |
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| Q |
201 |
tgggtactgcttcaataactgtatctgttcttacctttg |
239 |
Q |
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|||||||||| || || ||||| ||||||||||||||| |
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| T |
14320344 |
tgggtactgccccattagctgtaactgttcttacctttg |
14320306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 14304153 - 14303958
Alignment:
| Q |
1 |
tagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcg |
100 |
Q |
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||||||| ||||||||||| |||||||| |||||| |||||||| ||||| | || |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14304153 |
tagtaatgtttttcagtttcggataatgatgagccgcgattcgagaatgaagtcaacgaatgagttgcttaacaacatgcgtgtgattaaatttcaagcg |
14304054 |
T |
|
| Q |
101 |
tgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatggga |
196 |
Q |
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| T |
14304053 |
tgggaagagtacttcgggaacaagattcaacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgctgtgaacatggga |
14303958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 25885216 - 25885037
Alignment:
| Q |
11 |
tttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagt |
110 |
Q |
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|||||||||||||| |||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25885216 |
tttcagtttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcttgggaagagt |
25885117 |
T |
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| Q |
111 |
acttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaac |
190 |
Q |
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| T |
25885116 |
atttcggtaacaagattaaacagtttcgtgaatccgagcatggatggattgggaaattcatgtactattttgctgttaac |
25885037 |
T |
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