View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1732_low_32 (Length: 239)

Name: NF1732_low_32
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1732_low_32
NF1732_low_32
[»] chr3 (18 HSPs)
chr3 (12-221)||(12217199-12217408)
chr3 (17-218)||(7428277-7428478)
chr3 (26-110)||(2501455-2501539)
chr3 (41-119)||(7325091-7325169)
chr3 (55-179)||(772233-772357)
chr3 (55-179)||(2455066-2455190)
chr3 (61-119)||(7443708-7443766)
chr3 (24-149)||(37758418-37758543)
chr3 (26-110)||(9566501-9566585)
chr3 (26-139)||(2491354-2491467)
chr3 (26-139)||(7334950-7335063)
chr3 (26-110)||(755311-755395)
chr3 (32-92)||(759390-759450)
chr3 (32-107)||(23231708-23231783)
chr3 (41-110)||(2474413-2474482)
chr3 (26-139)||(2659821-2659934)
chr3 (26-167)||(9562642-9562783)
chr3 (28-112)||(7398853-7398937)
[»] chr6 (1 HSPs)
chr6 (29-167)||(24418152-24418290)
[»] chr2 (1 HSPs)
chr2 (32-179)||(33037365-33037512)
[»] chr7 (1 HSPs)
chr7 (29-122)||(27754913-27755006)
[»] scaffold1004 (1 HSPs)
scaffold1004 (65-179)||(1364-1478)
[»] scaffold0760 (1 HSPs)
scaffold0760 (65-179)||(3858-3972)
[»] scaffold0097 (1 HSPs)
scaffold0097 (24-130)||(33937-34043)
[»] chr5 (2 HSPs)
chr5 (31-158)||(20305085-20305212)
chr5 (31-158)||(20309489-20309616)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 12217408 - 12217199
Alignment:
Q  12 cataggatggcagtgcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctga 111  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12217408 cataagatggcggtgcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctga 12217309  T
Q  112 atgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtggtgccgcctgaagtgaaagcaatgttggggttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12217308 atgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtggtgccgcctgaagtgaaagcaatgttagggttt 12217209  T
Q  212 ccgtcaaggt 221  Q
    ||||||||||    
T  12217208 ccgtcaaggt 12217199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 7428277 - 7428478
Alignment:
Q  17 gatggcagtgcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgag 116  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7428277 gatggcggtgcttggttgacaagcgaagatgcttctctgcaaatttgggatcagagattaaagaattgaagcacttacagaggcagcgaagctgaatgag 7428376  T
Q  117 taactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtggtgccgcctgaagtgaaagcaatgttggggtttccgtc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  7428377 taactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtggtgccgcttgtagtgaaagcaatgttagggtttccgtc 7428476  T
Q  217 aa 218  Q
    ||    
T  7428477 aa 7428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 2501539 - 2501455
Alignment:
Q  26 gcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctg 110  Q
    ||||||||||||  ||||||||||||| ||| ||||| |||||||| ||||||||||||||| ||||||| ||||| ||||||||    
T  2501539 gcttggttgacatacgaagatgtttctttgcgaatttaggatcagaaattaaagaattgaagaacttacaaaggcatcgaagctg 2501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 7325091 - 7325169
Alignment:
Q  41 gaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaa 119  Q
    |||||||||||| ||| ||  |||||||||| ||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  7325091 gaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatgagtaa 7325169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 772233 - 772357
Alignment:
Q  55 gcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaa 154  Q
    ||||||||||||||||| |||| || ||| |||||||| ||||||||||||||||| | |||||||||||| ||||  |  |||| ||| || || ||||    
T  772233 gcaaatttgggatcagatattagagtattaaaggacttgcagaggcagcgaagctgcacgagtaactttacaggaagccggcacagaatctccgccacaa 772332  T
Q  155 gatcaaacggaagcgtgggtagtgg 179  Q
    |||| || ||||| ||||| |||||    
T  772333 gatcgaatggaagagtgggcagtgg 772357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 2455190 - 2455066
Alignment:
Q  55 gcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaa 154  Q
    ||||||||||||||||| || | |||||| |||||||| ||||||||||||||||| | ||||||||| || ||||  |  |||| |||||| || || |    
T  2455190 gcaaatttgggatcagatataagagaattaaaggacttgcagaggcagcgaagctgcacgagtaacttcacaggaagccggcacagaatttccgccacga 2455091  T
Q  155 gatcaaacggaagcgtgggtagtgg 179  Q
    |||| || ||||| ||||| |||||    
T  2455090 gatcgaatggaagagtgggcagtgg 2455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 7443708 - 7443766
Alignment:
Q  61 ttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaa 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||| || ||||||||    
T  7443708 ttgggatcagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaa 7443766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 37758418 - 37758543
Alignment:
Q  24 gtgcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaacttt 123  Q
    |||| |||||||||  |||||||| ||||  || |||||||||||  ||||||||||||| |||||||| |||||||| || || || | |||||||||     
T  37758418 gtgcgtggttgacatacgaagatgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttgtaagagtaacttg 37758517  T
Q  124 accggaattctacacaaaatttctgc 149  Q
    || ||||  ||||| | |||||||||    
T  37758518 acaggaagcctacatagaatttctgc 37758543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 9566501 - 9566585
Alignment:
Q  26 gcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctg 110  Q
    |||| ||||||||  |||||||||| | ||| ||||| |||||||| || | ||||||||||||||| |||||||| ||||||||    
T  9566501 gctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaagctg 9566585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 2491467 - 2491354
Alignment:
Q  26 gcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttac 125  Q
    |||| ||||||||  ||||||| || | ||| ||||| |||||||| ||||||||||||||  ||||||| ||||| |||||||| |  ||||| || ||    
T  2491467 gctttgttgacaattgaagatgcttttttgcgaatttaggatcagaaattaaagaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcac 2491368  T
Q  126 cggaattctacaca 139  Q
    |||||  |||||||    
T  2491367 cggaagcctacaca 2491354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 7334950 - 7335063
Alignment:
Q  26 gcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttac 125  Q
    |||| ||||||||  |||| || |||| ||| ||||| ||||||||||| | |||||| ||| |||||||||| || |||||||| | |||||| || ||    
T  7334950 gctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaagctgtacgagtaatttcac 7335049  T
Q  126 cggaattctacaca 139  Q
    |||||  |||||||    
T  7335050 cggaagcctacaca 7335063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 755311 - 755395
Alignment:
Q  26 gcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctg 110  Q
    |||| ||||||||  |||||||||| | ||| ||||| |||||||| || | ||||||||| |||||||||||||| || |||||    
T  755311 gctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgcagctg 755395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 759390 - 759450
Alignment:
Q  32 ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggactt 92  Q
    ||||||||||||| || |||| |||||| |||||||| |||| || |||||||||||||||    
T  759390 ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattgaaggactt 759450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 23231708 - 23231783
Alignment:
Q  32 ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaag 107  Q
    |||| |||||||| ||||||| ||| || ||||||||||||||||  | |||||||||||||| ||| || |||||    
T  23231708 ttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaag 23231783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 2474482 - 2474413
Alignment:
Q  41 gaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctg 110  Q
    |||| ||||||| ||| ||| ||||||  || ||||||||||| ||| ||||||||||||| ||||||||    
T  2474482 gaaggtgtttctttgcgaatctgggattggaaattaaagaattaaagaacttacagaggcaccgaagctg 2474413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 2659821 - 2659934
Alignment:
Q  26 gcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttac 125  Q
    ||||||||||||  |||||||| |||| ||| || || |||||||| || | |||||||||  ||||||| | ||| |||||||| | |||||| || ||    
T  2659821 gcttggttgacatacgaagatgcttctttgcgaaattaggatcagaaataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcac 2659920  T
Q  126 cggaattctacaca 139  Q
    |||||  |||||||    
T  2659921 cggaagcctacaca 2659934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 9562642 - 9562783
Alignment:
Q  26 gcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttac 125  Q
    |||| ||||||||  |||| || |||| ||||||||||||||  || ||||||||||||||| ||| ||| || || |||||||| |  ||||| || ||    
T  9562642 gcttagttgacaattgaaggtgcttctttgcaaatttgggattggaaattaaagaattgaagaactcacacagacatcgaagctgtacaagtaatttcac 9562741  T
Q  126 cggaattctacacaaaatttctgcaacaagatcaaacggaag 167  Q
    |||||  ||||| | |||||| |  | ||||||||| |||||    
T  9562742 cggaagcctacagagaatttcaggcagaagatcaaaaggaag 9562783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 7398853 - 7398937
Alignment:
Q  28 ttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaa 112  Q
    |||| ||||| | |||| ||||||| || |||||||| ||||||||| |  | ||||||| ||||||||||||| ||||| ||||    
T  7398853 ttggctgacatgtgaaggtgtttctttgtaaatttggaatcagagataagggtattgaagaacttacagaggcatcgaagttgaa 7398937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 24418152 - 24418290
Alignment:
Q  29 tggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccgg 128  Q
    |||||||||||||||| || || | ||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| |||| ||||||||| || ||    
T  24418152 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggg 24418251  T
Q  129 aattctacacaaaatttctgcaacaagatcaaacggaag 167  Q
    ||  ||||||| ||| || || |||||||| || |||||    
T  24418252 aagcctacacagaatctcagctacaagatcgaagggaag 24418290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 33037512 - 33037365
Alignment:
Q  32 ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaat 131  Q
    |||||| ||||||||||||||  || ||||| |||||||| ||||| |||||||  ||||||||||| || ||||| |||||||| |  ||||||||||     
T  33037512 ttgacatgcgaagatgtttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaag 33037413  T
Q  132 tctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg 179  Q
    ||| || | |||||| || || |||||||||||||| |||||||||||    
T  33037412 tctgcatagaatttcagcgacgagatcaaacggaagagtgggtagtgg 33037365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 27755006 - 27754913
Alignment:
Q  29 tggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactt 122  Q
    |||||||||||||||| |||||||  |||||||| ||||| |||||||||||||| ||||||||||||||||| | ||| ||||  ||||||||    
T  27755006 tggttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaactt 27754913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 1478 - 1364
Alignment:
Q  65 gatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacgg 164  Q
    ||||||| ||||| || ||||| ||||| |||| ||||||||  |||| |||||| || || |||| ||||||||  ||||| ||||||||||| |||||    
T  1478 gatcagaaattaacgatttgaaagacttgcagacgcagcgaaattgaaggagtaatttcacgggaagtctacacaggatttcggcaacaagatctaacgg 1379  T
Q  165 aagcgtgggtagtgg 179  Q
    |||  ||||||||||    
T  1378 aagactgggtagtgg 1364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 3972 - 3858
Alignment:
Q  65 gatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacgg 164  Q
    ||||||| ||||| || ||||| ||||| |||| ||||||||  |||| |||||| || || ||||  |||||||  ||||| ||||||||||| |||||    
T  3972 gatcagaaattaaggatttgaaagacttgcagacgcagcgaaattgaaggagtaatttcacgggaagcctacacaggatttcggcaacaagatctaacgg 3873  T
Q  165 aagcgtgggtagtgg 179  Q
    |||  ||||||||||    
T  3872 aagactgggtagtgg 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 34043 - 33937
Alignment:
Q  24 gtgcttggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaacttt 123  Q
    ||||||||||||||   |||| ||||||| ||| || |||||||| ||||| |||||||  ||| ||||||||||||| || || || |||||||| ||     
T  34043 gtgcttggttgacatatgaaggtgtttctttgcgaaattgggatctgagatcaaagaatcaaagaacttacagaggcatcggagttgtatgagtaatttg 33944  T
Q  124 accggaa 130  Q
    |||||||    
T  33943 accggaa 33937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 20305212 - 20305085
Alignment:
Q  31 gttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaa 130  Q
    |||||||||||||| || ||||  || ||||||||||| | ||||| |||||||||||||||  | || || ||||| || | ||||||||| |  ||||    
T  20305212 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaa 20305113  T
Q  131 ttctacacaaaatttctgcaacaagatc 158  Q
     ||| || | |||||||||||| |||||    
T  20305112 gtctgcatagaatttctgcaaccagatc 20305085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 20309616 - 20309489
Alignment:
Q  31 gttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaa 130  Q
    |||||||||||||| || ||||  || ||||||||||| | ||||| |||||||||||||||  | || || ||||| || | ||||||||| |  ||||    
T  20309616 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaa 20309517  T
Q  131 ttctacacaaaatttctgcaacaagatc 158  Q
     ||| || | |||||||||||| |||||    
T  20309516 gtctgcatagaatttctgcaaccagatc 20309489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University