View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_34 (Length: 237)
Name: NF1732_low_34
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14282619 - 14282840
Alignment:
| Q |
1 |
ttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282619 |
ttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaag |
14282718 |
T |
|
| Q |
101 |
tacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282719 |
tacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatc |
14282818 |
T |
|
| Q |
201 |
aacaagggaccaacatacataa |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
14282819 |
aacaagggaccaacatacataa |
14282840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14320768 - 14320989
Alignment:
| Q |
1 |
ttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaag |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| || |||||| |||||| |
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| T |
14320768 |
ttgacaaccttaaaccctttttgtaaactgaagtgattatgctcgaacgaataagcataccgagtttttgagagtggaagttaaattgatgaacactaag |
14320867 |
T |
|
| Q |
101 |
tacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatc |
200 |
Q |
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|||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
14320868 |
tacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgatgtgaaatcaacaaaactttgaatc |
14320967 |
T |
|
| Q |
201 |
aacaagggaccaacatacataa |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14320968 |
aacaagggaccaacatacataa |
14320989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14304377 - 14304598
Alignment:
| Q |
1 |
ttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaag |
100 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||||| |
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| T |
14304377 |
ttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatggaagttgaattgatgaacactaag |
14304476 |
T |
|
| Q |
101 |
tacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatc |
200 |
Q |
| |
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|||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| |||| |
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| T |
14304477 |
tacttcaacagattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgtgaaatcaacaaaactctgaatc |
14304576 |
T |
|
| Q |
201 |
aacaagggaccaacatacataa |
222 |
Q |
| |
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| ||| ||||| |||||||||| |
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| T |
14304577 |
agcaatggaccgacatacataa |
14304598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25885450 - 25885671
Alignment:
| Q |
1 |
ttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaag |
100 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||| |||||||||||||||| ||||||||| | |||||| |||||||||||| | |||||| ||| || |
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| T |
25885450 |
ttgacaacctcagaccctttttgtaaaccgaagtaattatgctcgaacgaataagcataccgattttctgcgagtggaagttgtattgatgaacactcag |
25885549 |
T |
|
| Q |
101 |
tacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatc |
200 |
Q |
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||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
25885550 |
cacttcaactgattttgctgcaaaaaggatcaatatcaaaataataccttcactagtagtactatctttccttgatgtgaaatcaacaaaactctgaatc |
25885649 |
T |
|
| Q |
201 |
aacaagggaccaacatacataa |
222 |
Q |
| |
|
|||| ||||||| |||||||| |
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| T |
25885650 |
aacagtggaccaatatacataa |
25885671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44349295 - 44349515
Alignment:
| Q |
1 |
ttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaag |
100 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||| | |||||| |||||||||||| | ||||||| ||| || |
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| T |
44349295 |
ttgacaatcttagaccctttttgtaaaccaaagtgattatgctcgaacgaataagcataccgattttctgcgagtggaagttgtattgatgac-actcag |
44349393 |
T |
|
| Q |
101 |
tacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatc |
200 |
Q |
| |
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|||||||| ||||||||| |||||||||||| ||||||||| |||| |||||||| | |||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
44349394 |
tacttcaactgattttgctgcaaaaaggatcaatatcaaaataatatcttcactagtagtactatctttccttgatgtaaaatcaacaaaactctgaatc |
44349493 |
T |
|
| Q |
201 |
aacaagggaccaacatacataa |
222 |
Q |
| |
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|||| ||||||| |||||||| |
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| T |
44349494 |
aacagtggaccaatatacataa |
44349515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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