View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_4 (Length: 491)
Name: NF1732_low_4
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 4 - 476
Target Start/End: Complemental strand, 33170215 - 33169743
Alignment:
| Q |
4 |
attctccacagaatgttgaattgagtagttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatat |
103 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||| |
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| T |
33170215 |
attctccacagaatgttgaattgagtatatgtgttaacacaacatgcttgccaagaaagcctatggttgtaagagtaaagaaaggagtaagtgccaatat |
33170116 |
T |
|
| Q |
104 |
gtttgttgacaacaaagcttatagagatcatttgaattgtaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaa |
203 |
Q |
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|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33170115 |
gtttgttgacaataaagcttatagagatcatttgaacagcaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaa |
33170016 |
T |
|
| Q |
204 |
cacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatgaagtatctattttcatatcactagcctctc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33170015 |
cacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatgaagtatctattttcatatcattagcctctc |
33169916 |
T |
|
| Q |
304 |
aaaatgcatttgatgttcttgtcaaattcatatctttattataatttagtagctttaatccctttcttaatgtataagcaagggttattataagagggag |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33169915 |
aaaatgcatttgatgttcttgtcaaattcatatctttattataatttagtagctttaatccctttcttaatgtataagcaagggttattataagagggag |
33169816 |
T |
|
| Q |
404 |
aaagaaatgatgtgtttcaatttttctcttgtattatgtactcaaaataaaagcataatgaaatctacttatt |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33169815 |
aaagaaatgatgtgtttcaatttttctcttgtattatgtactcaaaataaaagcataatgaaatctacttatt |
33169743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 4 - 451
Target Start/End: Complemental strand, 33154493 - 33154051
Alignment:
| Q |
4 |
attctccacagaatgttgaattgagtagttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||| |
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| T |
33154493 |
attctccacagaatgttgaattgagtagttgtgtaaacacaacttgcttaccaagaaagcctattgtggtgagagtaaagaaaggggtcactgccaatat |
33154394 |
T |
|
| Q |
104 |
gtttgttgacaacaaagcttatagagatcatttgaattgtaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaa |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33154393 |
atttgttgacaacaaagcatatagagatcatttgaattgtaaattcgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaa |
33154294 |
T |
|
| Q |
204 |
cacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatgaagtatctattttcatatcactagcctctc |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||| ||| |||| ||||||||| |
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| T |
33154293 |
cacaaaatacctttcattgccattagagcattgtctgattttgctggaggaggttcagcattgtccaatgaagcatctatcttcttatctttagcctctc |
33154194 |
T |
|
| Q |
304 |
aaaatgcatttgatgttcttgtcaaattcatatctttattataatttagtagctttaatccctttcttaatgtataagcaagggttattataagagggag |
403 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||| | ||||||| |
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| T |
33154193 |
aaaatgcatttcatgttcttgtcaaattcatatctttattataattcagtagctttaatccctttct-----catgagcaagggtcattttgagagggaa |
33154099 |
T |
|
| Q |
404 |
aaagaaatgatgtgtttcaatttttctcttgtattatgtactcaaaat |
451 |
Q |
| |
|
|||||||| ||||||||||| || |||||| ||||| |||||||||| |
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| T |
33154098 |
aaagaaattatgtgtttcaaattctctcttagattatatactcaaaat |
33154051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 353
Target Start/End: Complemental strand, 33144753 - 33144404
Alignment:
| Q |
4 |
attctccacagaatgttgaattgagtagttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatat |
103 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
33144753 |
attctctacagaatgttgaattgagtagttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatgt |
33144654 |
T |
|
| Q |
104 |
gtttgttgacaacaaagcttatagagatcatttgaattgtaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||| |
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| T |
33144653 |
gtttgttgacaacaaagcttatagagattttttgaacttgaaatttgatgctactccagtagacatggaaagtgcttctgttgccttagtttgtttccaa |
33144554 |
T |
|
| Q |
204 |
cacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttctgcattgagcaatgaagtatctattttcatatcactagcctctc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || || | |||| ||||||| | |
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| T |
33144553 |
cacaaaatacctttcattgccattagagcattgtctgatttagctggaggaggttcatcattgaccaatgaatattccatctatttatctttagcctccc |
33144454 |
T |
|
| Q |
304 |
aaaatgcatttgatgttcttgtcaaattcatatctttattataatttagt |
353 |
Q |
| |
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||||||||||| ||||||||||||||||||| || ||| ||| ||||||| |
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| T |
33144453 |
aaaatgcatttaatgttcttgtcaaattcatctccttaatatgatttagt |
33144404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 33148942 - 33148793
Alignment:
| Q |
11 |
acagaatgttgaattgagtagttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatatgtttgtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| | || |||| |||| |||||||| |
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| T |
33148942 |
acagaatgttgaattgagtagttgtgttaagacaacttgcttgccaagaaagcctatggtggtgagagtaaaaaaacgggtcagtgtcaatgtgtttgtt |
33148843 |
T |
|
| Q |
111 |
gacaacaaagcttatagagatcatttgaattgtaaatttgatgctactcc |
160 |
Q |
| |
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||||||| || || ||||||||||||||| | ||||||| || |||||| |
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| T |
33148842 |
gacaacagagattgtagagatcatttgaactccaaatttggtgatactcc |
33148793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 33148729 - 33148670
Alignment:
| Q |
289 |
tatcactagcctctcaaaatgcatttgatgttcttgtcaaattcatatctttattataat |
348 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
33148729 |
tatcattagcctcacaaaatgcatttgatgttcttgtcaaattcatatccttgttataat |
33148670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 33140062 - 33140022
Alignment:
| Q |
435 |
tattatgtactcaaaataaaagcataatgaaatctacttat |
475 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||| |
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| T |
33140062 |
tattatgtattcaaaataaaagtataatgaaatctacttat |
33140022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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