View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_41 (Length: 233)
Name: NF1732_low_41
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34090598 - 34090377
Alignment:
| Q |
1 |
ttgtaaattaaggattatgtgaagttannnnnnnattgctaggattataggtaaagttgattataatttttgtgagtgttaaatattactgcattgttaa |
100 |
Q |
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| T |
34090598 |
ttgtaaatttaggattatgtgaagttatttttttattgctaggattatatgtaaagttgattataatttttgtgagtgttgaatattcctgcattgttaa |
34090499 |
T |
|
| Q |
101 |
tttaaaatgtcaaagatataagttagttgagttttgagttatgtgatttaaagtttaagtgagttgttagtnnnnnnnnnttctattaaattcaaatcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
34090498 |
tttaaaatgtcaaagatataagttagttgagttttgagttatgtgatttaaagtttaagtgagttgttagtaaaaaaaaattgtattaaattcaaatcgt |
34090399 |
T |
|
| Q |
201 |
attttaagctgaattcattcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34090398 |
attttaagctgaattcattcat |
34090377 |
T |
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