View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1732_low_42 (Length: 228)
Name: NF1732_low_42
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 37799841 - 37800038
Alignment:
| Q |
19 |
taggtaaattagtcctctagcaattccaagagcaatttggtatctcattttccaacccaacacctcagaactattgttcccaaacaaatggaaatccaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37799841 |
taggtaaattagtcctctagcaattccaagagcaatttggtatctcattttccaacccaacacctcagaactattgttcccaaacaaatggaaatccaag |
37799940 |
T |
|
| Q |
119 |
gaacgatttggcatataatcataaaccagcaaccttttggtaccttttgagcaaaatccacggaggcgaacaagattaacatgttgcattgtccctat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37799941 |
gaacgatttggcatataatcataaaccagcaaccttttggtaccttttgagcaaaacccacggaggcgaacaagattaacatgttgcattgtccctat |
37800038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 37765886 - 37765705
Alignment:
| Q |
38 |
gcaattccaagagcaatttggtatctcattttccaacccaacacctcagaac--tattgttccca-aacaaatggaaatccaaggaacgatttggcatat |
134 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| ||||||||| |||| | || || | | || ||||||||||||||||||| ||| ||||| | |
|
|
| T |
37765886 |
gcaattccaatagcaatttggtatctcagtttccagtccaacaccttagaagagtcttttttcaagaataaatggaaatccaaggaaccattaggcatgt |
37765787 |
T |
|
| Q |
135 |
aatcataaaccagcaaccttttggtaccttttgagcaaaatccacggaggcgaacaagattaacatgttgcattgtccctat |
216 |
Q |
| |
|
||||||||||||||| |||||| ||||||| ||| || ||||| ||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
37765786 |
aatcataaaccagcatccttttagtaccttctgaacagaatcctcggagacgaacaaggttaacatgttgcactgtccctat |
37765705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University