View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1732_low_46 (Length: 213)
Name: NF1732_low_46
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 46789502 - 46789418
Alignment:
| Q |
115 |
cttagttcaaaactcattgttgcacaaactatataacttttttatgtataaatctgttcattcaattacaggagtatggttcctg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46789502 |
cttagttcaaaactcattgttgcacaaactatataacttttttatgtataaatctgttcattcaattacaggagtatggttcctg |
46789418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 46789591 - 46789526
Alignment:
| Q |
16 |
aaaagaatcataacaaatcatattctattagcaacccttgtaaatagcattgcatatataccccttatatttaact |
91 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46789591 |
aaaagaatcataacaaatcatattcta----------ttgtaaatagcattgcatatataccccttatatttaact |
46789526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University