View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_7 (Length: 430)
Name: NF1732_low_7
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 6916944 - 6917372
Alignment:
| Q |
1 |
atcatggcaggcttcttgtatattgttccggtctggccaaaagggcggccatatccaagtcctttcaacaatttggagttcattgattcattctgaatta |
100 |
Q |
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| T |
6916944 |
atcatggcaggcttcttgtatattgttccggtctggccaaaagggcgaccatatccaagtcctttcaacaatttggagttcattgattcattctgaatta |
6917043 |
T |
|
| Q |
101 |
tcaccttcacaaagctaaggtttagaaacaggcacacagtgacagacgcagcagtgttcctctgaatctcaataggcagaagaactgttggaagaaaatt |
200 |
Q |
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| T |
6917044 |
tcaccttcacaaagctaaggtctagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaatt |
6917143 |
T |
|
| Q |
201 |
cagtttagcatcattcacggcggcgacagtgaagtctccgttgaaccgccttcattagtcaaagct-------cgccattgacagcaccccgagtttccc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
6917144 |
cagtttagcatcattcacggcggcgacagtgaagtctccgccaaaccgccttcattagtcaaagctcgagcagcgccattgacagcacgccgagtttccc |
6917243 |
T |
|
| Q |
294 |
atggacacgctcagagattgatcctgaagccgcagcagtttgagacgagtccgctcccgtatctggcaatcagtttgagctgtgctgtgctcgtggaagc |
393 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
6917244 |
acagacacgctcagagattgatcctgaagccgcagcagtttgagacgagtctgctcccgtatctggcaaacagtttgagctgtgccatgctcgtggaagc |
6917343 |
T |
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| Q |
394 |
ctagccgcccaggaga--ccgcccaagaa |
420 |
Q |
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| T |
6917344 |
gtagccacccaggagaggccgcccaagaa |
6917372 |
T |
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