View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732_low_8 (Length: 418)
Name: NF1732_low_8
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 26672540 - 26672282
Alignment:
| Q |
11 |
cagagacagagctgaacaaaacacagtgtcggaaggaagaaggaatctaaacatccatcattttctcgtgattccctaacccatctacattctcttctct |
110 |
Q |
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| T |
26672540 |
cagagacagagctgaacaaaacacagtgtcggaaggaagaaggaatctaaacatccatcattttctcgtgattccctaacccatctacattctcttctct |
26672441 |
T |
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| Q |
111 |
tctttttattatccttcctcatacacacgcgccattctcattccacgcgccttctcttctttctttcctagctagggtttccttctctcatcatcgcaat |
210 |
Q |
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| T |
26672440 |
tctttttattatccttcctcatacacacgcgccattctcattccacgcgccttctcttctttctttc----ctagggtttccttctctcatcatcgcaat |
26672345 |
T |
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| Q |
211 |
gtccagccccatcgatcgtttcgctcttccatgtcagttcccctctctcattcatacattcaa |
273 |
Q |
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| T |
26672344 |
gtccagccccatcgatcgtttcgctcttccatgtcagttcccctctctcattcatacattcaa |
26672282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 26672219 - 26672153
Alignment:
| Q |
336 |
ggtagtgatgaaaaaagaaccgaaagaaaatctgattttaagatttctggtagttctagtaatggtg |
402 |
Q |
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| T |
26672219 |
ggtagtgatgaaaaaagaaccgaaagaaaatctgattttaagatttctggtagttctagtaatggtg |
26672153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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