View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1733-Insertion-10 (Length: 490)

Name: NF1733-Insertion-10
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1733-Insertion-10
NF1733-Insertion-10
[»] chr4 (9 HSPs)
chr4 (8-490)||(42764561-42765040)
chr4 (82-284)||(42745604-42745805)
chr4 (82-284)||(42754965-42755166)
chr4 (323-490)||(42745369-42745539)
chr4 (140-205)||(42765325-42765390)
chr4 (163-276)||(42732282-42732396)
chr4 (323-490)||(42754729-42754900)
chr4 (401-467)||(42732745-42732811)
chr4 (402-490)||(42720142-42720230)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 42765040 - 42764561
Alignment:
Q  8 gactccataacaaactcataatggctgctcacaaaaggaatttgaataaaaaa-caatcacataacttacttagttatataagtgagggaaaacacatac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||||||||||||    
T  42765040 gactccataacaaactcataatggctgctcacaaaaggaatttgaataaaaaaacaatcacataactta----gttatataagtgagggaaaacacatac 42764945  T
Q  107 cctttgcatatccttgagattttattttgcataacaaacatcattcatgagagaagcaatgtcttcatccatttctcatgttttaatatcacttcttctt 206  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42764944 cctttgtatatccttgagattttattttgcataacaaacatcattcatgagagaagcaatgtcttcatccatttctcatgtgttaatatcacttcttctt 42764845  T
Q  207 tttgttttgctgcatgaacctacccttgcaattaaacaggc-aagcttattgtctcatgttttcattattcgttgctcattctcattgtagacaacttat 305  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42764844 tttgttttgctgcatgaacctacccttgcaattaaacaggcaaagcttattgtctcttgttttcattattcgttgctcattctcattgtagacaacttat 42764745  T
Q  306 gatattattaaatttcatgctcatcataatctaattttcatattttaatgtttaaatatttggtttactaatcaatcatgtgnnnnnnnnnnncgttagt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  42764744 gatattattaaatttcatgctcatcataatctaattttcatattttaatgtttaaatatttggtttactaatcaatcatgtg-ttttttttttcgttagt 42764646  T
Q  406 cctatattgtatacttaggatcacattctttcggtccaaatccttcatcatttgattttgaacttgcaacgaactcccactatga 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42764645 cctatattgtatacttaggatcacattctttcggtccaaatccttcatcatttgattttgaacttgcaacgaactcccactatga 42764561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 82 - 284
Target Start/End: Complemental strand, 42745805 - 42745604
Alignment:
Q  82 tatataagtgagggaaaacacataccctttgcatatccttgagattttattttgcataacaaacatcattcatgagagaagcaatgtcttcatccatttc 181  Q
    |||||||| || ||| | ||||||| ||||| |||||| | | |||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  42745805 tatataagcgaaggagagcacatacactttgtatatccctaaaattt-attttgaaaaacaaacatcattcatgagagaaacaatgtcttcatccatttc 42745707  T
Q  182 tcatgttttaatatcacttcttctttttgttttgctgcatgaacctacccttgcaattaaacaggcaagcttattgtctcatgttttcattattcgttgc 281  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||  |||||||||||| ||||    
T  42745706 tcatgtgttaatgtcacttcttctttttgttttactgcaggaacctacccttgcaattaaacaggcaagattattttctcaaattttcattattcattgc 42745607  T
Q  282 tca 284  Q
    |||    
T  42745606 tca 42745604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 82 - 284
Target Start/End: Complemental strand, 42755166 - 42754965
Alignment:
Q  82 tatataagtgagggaaaacacataccctttgcatatccttgagattttattttgcataacaaacatcattcatgagagaagcaatgtcttcatccatttc 181  Q
    |||||||| || ||| | ||||||| ||||| |||||| | | |||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  42755166 tatataagcgaaggagagcacatacactttgtatatccctaaaattt-attttgaaaaacaaacatcattcatgagagaaacaatgtcttcatccatttc 42755068  T
Q  182 tcatgttttaatatcacttcttctttttgttttgctgcatgaacctacccttgcaattaaacaggcaagcttattgtctcatgttttcattattcgttgc 281  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||  |||||||||||| ||||    
T  42755067 tcatgtgttaatgtcacttcttctttttgttttactgcaggaacctacccttgcaattaaacaggcaagattattttctcaaattttcattattcattgc 42754968  T
Q  282 tca 284  Q
    |||    
T  42754967 tca 42754965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 490
Target Start/End: Complemental strand, 42745539 - 42745369
Alignment:
Q  323 tgctcatcataatctaattttcatattttaatgtttaaatatttggtttactaatcaatcatg---tgnnnnnnnnnnncgttagtcctatattgtatac 419  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||    |             ||||||||||||||||||||    
T  42745539 tgctcatcataatctaatttttatattttaatgtttaactatttggtctaataatcaatcattgttttttttttttttttgttagtcctatattgtatac 42745440  T
Q  420 ttaggatcacattctttcggtccaaatccttcatcatttgattttgaacttgcaacgaactcccactatga 490  Q
    |||||||||||||||   |||||||||||||||||||||||| |||||  ||| || ||||| ||||||||    
T  42745439 ttaggatcacattctcatggtccaaatccttcatcatttgatattgaatctgccacaaactctcactatga 42745369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 42765390 - 42765325
Alignment:
Q  140 acaaacatcattcatgagagaagcaatgtcttcatccatttctcatgttttaatatcacttcttct 205  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  42765390 acaaacatcattcatgagagaagcaatgtcttcatccatttgtcatgtgttaatatcacttcttct 42765325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 42732282 - 42732396
Alignment:
Q  163 caatgtcttcatccatttctcatgttttaatatcacttcttctttttgttttgctgcatgaa---cctacccttgcaattaaacaggcaagcttattgtc 259  Q
    ||||||| |||||||||| |||||| || | || ||||||||||||||||||| |||| |||   ||||||||||||||||||||||||||||  |||||    
T  42732282 caatgtcatcatccatttgtcatgtgttgacattacttcttctttttgttttgatgcaggaacatcctacccttgcaattaaacaggcaagct--ttgtc 42732379  T
Q  260 tcatgttttcattattc 276  Q
    ||| |||||||||||||    
T  42732380 tcaagttttcattattc 42732396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 490
Target Start/End: Complemental strand, 42754900 - 42754729
Alignment:
Q  323 tgctcatcataatctaattttcatattttaatgtttaaatatttggtttactaatcaatca----tgtgnnnnnnnnnnncgttagtcctatattgtata 418  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||    | |              ||||||||||||||||||    
T  42754900 tgctcatcataatctaatttttatattttaatgtttaactatttggtctaataatcaatcattgttttttttttttttttgtttagtcctatattgtata 42754801  T
Q  419 cttaggatcacattctttcggtccaaatccttcatcatttgattttgaacttgcaacgaactcccactatga 490  Q
    ||||||||||||||||   |||||||||||||||||||||||| |||||  ||| || ||||| ||||||||    
T  42754800 cttaggatcacattctcatggtccaaatccttcatcatttgatattgaatctgccacaaactctcactatga 42754729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 401 - 467
Target Start/End: Original strand, 42732745 - 42732811
Alignment:
Q  401 ttagtcctatattgtatacttaggatcacattctttcggtccaaatccttcatcatttgattttgaa 467  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||    
T  42732745 ttagtcctatattgtatacttaggatcacattcatatggtccaaatccttcatcatttgatattgaa 42732811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 402 - 490
Target Start/End: Complemental strand, 42720230 - 42720142
Alignment:
Q  402 tagtcctatattgtatacttaggatcacattctttcggtccaaatccttcatcatttgattttgaacttgcaacgaactcccactatga 490  Q
    |||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||| |||||  ||| || ||||| ||||||||    
T  42720230 tagtcctatattgtatacttaggatcacattctcatggtccagatccttcatcatttgatattgaatctgccacaaactctcactatga 42720142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University