View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1733-Insertion-11 (Length: 791)

Name: NF1733-Insertion-11
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1733-Insertion-11
NF1733-Insertion-11
[»] scaffold0211 (2 HSPs)
scaffold0211 (7-791)||(24486-25269)
scaffold0211 (376-438)||(24461-24524)
[»] scaffold0084 (4 HSPs)
scaffold0084 (286-680)||(30828-31226)
scaffold0084 (9-383)||(18048-18431)
scaffold0084 (7-258)||(30572-30828)
scaffold0084 (735-791)||(30900-30956)
[»] chr7 (13 HSPs)
chr7 (7-282)||(19143387-19143665)
chr7 (7-282)||(20742786-20743064)
chr7 (448-518)||(4587680-4587750)
chr7 (603-662)||(21821848-21821907)
chr7 (593-663)||(21861326-21861396)
chr7 (593-663)||(25620168-25620238)
chr7 (617-663)||(1596649-1596695)
chr7 (617-663)||(33834247-33834293)
chr7 (617-663)||(33996293-33996339)
chr7 (602-656)||(44874567-44874621)
chr7 (477-518)||(240522-240563)
chr7 (617-662)||(10882222-10882267)
chr7 (593-662)||(40746297-40746366)
[»] chr4 (17 HSPs)
chr4 (83-285)||(22317345-22317550)
chr4 (593-661)||(35788691-35788759)
chr4 (96-171)||(22223455-22223530)
chr4 (593-656)||(53828512-53828575)
chr4 (593-663)||(22231290-22231360)
chr4 (593-646)||(21685030-21685083)
chr4 (617-662)||(22445508-22445553)
chr4 (449-518)||(42454556-42454625)
chr4 (617-669)||(40717417-40717469)
chr4 (447-518)||(41635658-41635729)
chr4 (596-661)||(4464330-4464395)
chr4 (593-662)||(6666618-6666687)
chr4 (593-662)||(14783170-14783239)
chr4 (447-508)||(18553065-18553126)
chr4 (477-514)||(21823393-21823430)
chr4 (617-662)||(35796960-35797005)
chr4 (617-662)||(53814912-53814957)
[»] chr2 (22 HSPs)
chr2 (94-307)||(8684845-8685061)
chr2 (83-305)||(16152959-16153186)
chr2 (94-179)||(26655336-26655421)
chr2 (83-170)||(17418208-17418295)
chr2 (82-167)||(21822968-21823053)
chr2 (52-177)||(24216647-24216772)
chr2 (448-518)||(35406103-35406173)
chr2 (619-656)||(13210584-13210621)
chr2 (617-662)||(40149219-40149264)
chr2 (51-127)||(26653991-26654067)
chr2 (617-660)||(93612-93655)
chr2 (449-508)||(21625154-21625213)
chr2 (96-167)||(21770295-21770366)
chr2 (593-656)||(28407782-28407845)
chr2 (447-506)||(31483251-31483310)
chr2 (593-656)||(40379433-40379496)
chr2 (593-663)||(2029801-2029871)
chr2 (617-663)||(14466392-14466438)
chr2 (593-663)||(16419299-16419369)
chr2 (93-167)||(19563955-19564029)
chr2 (480-518)||(20515848-20515886)
chr2 (447-508)||(31475539-31475600)
[»] chr5 (17 HSPs)
chr5 (28-167)||(22747793-22747932)
chr5 (94-271)||(9823558-9823735)
chr5 (93-285)||(19570286-19570483)
chr5 (593-663)||(24531631-24531701)
chr5 (93-179)||(24885900-24885985)
chr5 (593-662)||(18333682-18333751)
chr5 (593-662)||(8098349-8098418)
chr5 (593-661)||(41666977-41667045)
chr5 (96-167)||(26013218-26013289)
chr5 (593-663)||(24528572-24528642)
chr5 (448-518)||(30985816-30985885)
chr5 (617-662)||(2063717-2063762)
chr5 (190-307)||(12046493-12046616)
chr5 (593-646)||(18333464-18333517)
chr5 (593-662)||(21209904-21209973)
chr5 (98-163)||(24163057-24163122)
chr5 (617-662)||(24487628-24487673)
[»] chr8 (18 HSPs)
chr8 (28-179)||(18565342-18565493)
chr8 (97-307)||(23433630-23433843)
chr8 (447-518)||(33053638-33053709)
chr8 (94-171)||(13644650-13644727)
chr8 (94-171)||(13745075-13745152)
chr8 (597-661)||(38476074-38476138)
chr8 (605-656)||(12317090-12317141)
chr8 (617-652)||(38475803-38475838)
chr8 (602-656)||(422442-422496)
chr8 (621-663)||(10615138-10615180)
chr8 (617-663)||(11232176-11232222)
chr8 (617-663)||(11232411-11232457)
chr8 (617-663)||(36917421-36917467)
chr8 (475-508)||(13109635-13109668)
chr8 (617-662)||(20301317-20301362)
chr8 (617-662)||(21087949-21087994)
chr8 (593-662)||(37001258-37001327)
chr8 (617-662)||(41790714-41790759)
[»] scaffold0004 (1 HSPs)
scaffold0004 (7-305)||(382026-382332)
[»] scaffold0062 (1 HSPs)
scaffold0062 (28-235)||(980-1190)
[»] chr1 (12 HSPs)
chr1 (28-177)||(12439850-12439999)
chr1 (593-662)||(51589838-51589907)
chr1 (595-663)||(38668159-38668227)
chr1 (448-519)||(4521868-4521939)
chr1 (593-663)||(4112988-4113058)
chr1 (449-519)||(24115483-24115553)
chr1 (480-518)||(24634052-24634090)
chr1 (480-518)||(44787643-44787681)
chr1 (593-646)||(4112539-4112592)
chr1 (481-518)||(11324636-11324673)
chr1 (481-518)||(11482657-11482694)
chr1 (593-646)||(31181512-31181565)
[»] chr6 (18 HSPs)
chr6 (448-510)||(16434123-16434185)
chr6 (96-167)||(10481532-10481603)
chr6 (447-518)||(22259488-22259559)
chr6 (28-170)||(17206315-17206457)
chr6 (593-662)||(33494571-33494640)
chr6 (595-663)||(3680046-3680114)
chr6 (84-168)||(34659350-34659434)
chr6 (455-518)||(3634199-3634262)
chr6 (144-296)||(19122392-19122548)
chr6 (94-171)||(21689535-21689612)
chr6 (593-661)||(4868797-4868865)
chr6 (593-661)||(15082128-15082196)
chr6 (28-124)||(19730888-19730984)
chr6 (617-656)||(8001539-8001578)
chr6 (617-663)||(13353257-13353303)
chr6 (617-663)||(33796382-33796428)
chr6 (593-662)||(8026421-8026490)
chr6 (593-662)||(27653249-27653318)
[»] scaffold0711 (1 HSPs)
scaffold0711 (7-175)||(2212-2380)
[»] chr3 (17 HSPs)
chr3 (98-174)||(16201847-16201923)
chr3 (28-127)||(10878410-10878509)
chr3 (593-662)||(9272993-9273062)
chr3 (593-661)||(16239623-16239691)
chr3 (448-508)||(17132470-17132530)
chr3 (113-167)||(27486608-27486662)
chr3 (593-663)||(54567924-54567994)
chr3 (593-662)||(1723059-1723128)
chr3 (593-662)||(54368548-54368617)
chr3 (96-167)||(11073825-11073896)
chr3 (617-656)||(22729156-22729195)
chr3 (113-196)||(21528692-21528777)
chr3 (617-663)||(45828075-45828121)
chr3 (593-662)||(11589817-11589886)
chr3 (617-654)||(13824970-13825007)
chr3 (595-656)||(16926938-16926999)
chr3 (98-171)||(20736632-20736705)
[»] scaffold0692 (1 HSPs)
scaffold0692 (617-663)||(5736-5782)
[»] scaffold0519 (1 HSPs)
scaffold0519 (617-663)||(1972-2018)
[»] scaffold0129 (1 HSPs)
scaffold0129 (593-663)||(14335-14405)
[»] scaffold0048 (1 HSPs)
scaffold0048 (617-663)||(81898-81944)
[»] scaffold0005 (1 HSPs)
scaffold0005 (593-662)||(56491-56560)


Alignment Details
Target: scaffold0211 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 791
Target Start/End: Complemental strand, 25269 - 24486
Alignment:
Q  7 agtgtccttgagcaagaaatgtcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtga 106  Q
    |||||||||||||| ||| |||||||||  ||||||| |||||| |||||||||||||||||||| ||||   || ||||||||||||||||||||||||    
T  25269 agtgtccttgagcaggaagtgtcttgcaattgtgcttgagcattaagaagtctattggaagagtccttgagcaatttgtaatccaaagtgattatagtga 25170  T
Q  107 aacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctctgtctctttatc- 205  Q
    ||||| |||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||||| |||  | ||||||||||||||||     
T  25169 aaccccttggaagtgcaaggggattggactactcctttattgtgggaggaaccaatataaaattgttttgtgtttgctttgtctctctgtctctttatct 25070  T
Q  206 ttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttttaacacagaaaaagaaactacaaaaa 305  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| | ||||||    
T  25069 ttgtgttatgtatttaatccgctgcattcaaaccatgagtcaaaatctacatatttcagattctgatcaagttttaacacagaaaaagaaattgcaaaaa 24970  T
Q  306 gcagatgttgagtgacttctacttgattatttagtttgcagctatgcaatcatttggccatttggtagtgtggctctaactaac-ttttgttatgttttc 404  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  24969 gcagat-ttgggtgacttctacttgattatgtagtttgcagctatgcaatcatttggccatttggtagtgtggctctgactaactttttgtgatgttttc 24871  T
Q  405 tcttcctgccaagctattcaccattgtttatttggccatttgggatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaa 504  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||    | ||||||||||||||||||||||||||||    
T  24870 tcttcctgccaagctgtttaccattgtttatttggccatttgggatttttagtttgatcctgcaag---aaatttaaaactagtcttattgtttatcaaa 24774  T
Q  505 aacatcggtaaacagtgacccatcgagnnnnnnnnnnnnggctccaccattgatcatgttgaacaagtgtcacactcatttttagttaacctcacatgcc 604  Q
    || |||||||||||| |||||| ||||            ||||||| |||||||||||||||||||| ||||||||||||||   ||||||||||| |||    
T  24773 aatatcggtaaacagcgacccaccgag-attttttttttggctccatcattgatcatgttgaacaagcgtcacactcattttagtttaacctcacaagcc 24675  T
Q  605 gattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctcaaatattcgttggaccggcctgctatcagatcacctaccat 704  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  24674 gattttatggcgttgtattaagcccaaccacaaattctaagatggtatcagagcctctcgaatattagttggaccggcctgctatcagatcacctaccat 24575  T
Q  705 ttatatcctgaggcatgaaatgtaatagtgtttggccatttggt--agtatggctctgatcaactgttgtgatgtttgctcttcctgcc 791  Q
    |||||| |  |||||||||||   ||||||||||||||||||||    ||||||||| || ||||||||||||||||||||||||||||    
T  24574 ttatattcccaggcatgaaatcatatagtgtttggccatttggtgatatatggctctaattaactgttgtgatgtttgctcttcctgcc 24486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 24524 - 24461
Alignment:
Q  376 tggctctaactaacttttgttatgttttctcttcctgccaagctatt-caccattgtttatttg 438  Q
    ||||||||| ||||| |||| |||||| |||||||||||||||| || |||| |||||||||||    
T  24524 tggctctaattaactgttgtgatgtttgctcttcctgccaagctgttgcacctttgtttatttg 24461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 286 - 680
Target Start/End: Original strand, 30828 - 31226
Alignment:
Q  286 agaaaaagaaactacaaaaagcagatgttgagtgacttctacttgattatttagtttgcagctatgcaatcatttggccatttggtagtgtggctctaac 385  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30828 agaaaaagagactgcaaaaagcagatgttgggtgacttctacttgattatttagtttgcagctatgcaatcatttggccatttggtagtgtggctctgac 30927  T
Q  386 taacttttgttatgttttctcttcctgccaagctattcaccattgtttatttggccatttgggatttctagtttgatcttgcaagcactattttaaaact 485  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  30928 taacttttgtgatgttttctcttcctgccaagctgttcaccattgtttatttggccatttgggatttctagtttgatcatgcaagcaatattttaaaact 31027  T
Q  486 agtcttattgtttatcaaaaacatcggtaaacagtgacccatcga---gnnnnnnnnnnnnggctccaccattgatcatgttgaacaagtgtcacactca 582  Q
    |||| ||||| ||||  |||| |||||||||||| |||||| | |                |||||||||||||||||||||||||||| |||| |||||    
T  31028 agtcatattgattatttaaaaaatcggtaaacagcgacccaccaattttttatttttttttggctccaccattgatcatgttgaacaagcgtcaaactca 31127  T
Q  583 tttttagtt-aacctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctcaaatattcgttggaccg 680  Q
    ||||| ||| || |||||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31128 tttttcgttcaatctcactagcctattttatggcattatgttaagcccaaccacaaattctaagatggtatcagagcctctcaaatattcgttggaccg 31226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 18048 - 18431
Alignment:
Q  9 tgtccttgagcaagaaatgtcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaa 108  Q
    |||||| | ||| ||| |||||||||| ||||||| ||||| ||||||| | ||||||||||| ||||   || | ||||||| ||||||||||||||||    
T  18048 tgtcctagggcaggaattgtcttgcagttgtgcttgagcatagagaagtatcttggaagagtccttgagcaatttttaatccagagtgattatagtgaaa 18147  T
Q  109 cccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctctgtctct------tt 202  Q
    ||  |||||| | ||||| || | || |||||||||||||| ||||||||||||||||||||| ||| | | | ||| ||||||||||||||      ||    
T  18148 cctcttggaagtacaaggagactcgactactcctttgttgtaggaggaaccaatataaaattgatttatctatgctttctttctctgtctctgtctcttt 18247  T
Q  203 atctt-gtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttttaacaca--gaaaaagaaacta 299  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |  ||||||||||  ||||||||||||     
T  18248 atctttgtgttttgtatttaatccgctgcattcagaccatgagtcaaaatctacatatctcaaattctgataagcttttaacacatagaaaaagaaactg 18347  T
Q  300 caaaaagcagatgttgagtgacttctacttgattatttagtttgcagctatgcaatcatttggccatttggtagtgtggctcta 383  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18348 caaaaagcagatgttgggtgacttctacttaattatttagtttgcagctatgcaatcatttggccatttggtagtgtggctcta 18431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 30572 - 30828
Alignment:
Q  7 agtgtccttgagcaagaaatgtcttgca----gctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattata 102  Q
    |||||||||||||| ||| ||||||| |    | ||||||| |||||||||||||||| | |||||||| ||||   || ||||||||||||| ||||||    
T  30572 agtgtccttgagcaggaagtgtcttgtacgtagttgtgcttgagcattgagaagtctactagaagagtccttgagcaatttgtaatccaaagtaattata 30671  T
Q  103 gtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctctgtctcttt 202  Q
    ||||||||| |||||| ||||||||||||||| ||||||||| |||  ||||||||||||||||||||| ||||||||| ||| || ||| ||| | |||    
T  30672 gtgaaaccccttggaagtgcaaggggattggactactccttttttgagggaggaaccaatataaaattgatttgtgtttgctttctctctttgtattttt 30771  T
Q  203 atc-ttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacata 258  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30772 atctttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacata 30828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 735 - 791
Target Start/End: Original strand, 30900 - 30956
Alignment:
Q  735 tttggccatttggtagtatggctctgatcaactgttgtgatgtttgctcttcctgcc 791  Q
    ||||||||||||||||| |||||||||  |||| ||||||||||| |||||||||||    
T  30900 tttggccatttggtagtgtggctctgactaacttttgtgatgttttctcttcctgcc 30956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 19143387 - 19143665
Alignment:
Q  7 agtgtccttgagcaag-aaatgtcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtg 105  Q
    |||||||| ||||||| |||| |||||||| ||||||| ||||||||||| ||| ||||||||||| |||| | || ||||||| | |||||||||||||    
T  19143387 agtgtcctagagcaaggaaatttcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtg 19143486  T
Q  106 aaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctc--tgtctcttta 203  Q
    ||| || |||||| |||||||| | || | ||||| | |||||| |||||||||  |||||||||||| ||||| | ||| || ||||  ||||||||||    
T  19143487 aaatcccttggaagtgcaagggaactgaactactcttgtgttgtgggaggaacctgtataaaattgctctgtgtcttctttctctctctttgtctcttta 19143586  T
Q  204 tc-ttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttttaa 282  Q
    || ||||||| |  |||| ||| ||| |||||||||| ||||||| ||||||||||||| ||||||||| || |||||||    
T  19143587 tctttgtgttttacattt-atctgctacattcagaccctgagtcagaatctacatacctaagattctgaccaggttttaa 19143665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 20742786 - 20743064
Alignment:
Q  7 agtgtccttgagcaag-aaatgtcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtg 105  Q
    |||||||| ||||||| |||| |||||||| ||||||| ||||||||||| ||| ||||||||||| |||| | || ||||||| | |||||||||||||    
T  20742786 agtgtcctagagcaaggaaatttcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtg 20742885  T
Q  106 aaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctc--tgtctcttta 203  Q
    ||| || |||||| |||||||| | || | ||||| | |||||| |||||||||  |||||||||||| ||||| | ||| || ||||  ||||||||||    
T  20742886 aaatcccttggaagtgcaagggaactgaactactcttgtgttgtgggaggaacctgtataaaattgctctgtgtcttctttctctctctttgtctcttta 20742985  T
Q  204 tc-ttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttttaa 282  Q
    || ||||||| |  |||| ||| ||| |||||||||| ||||||| ||||||||||||| ||||||||| || |||||||    
T  20742986 tctttgtgttttacattt-atctgctacattcagaccctgagtcagaatctacatacctaagattctgaccaggttttaa 20743064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 518
Target Start/End: Complemental strand, 4587750 - 4587680
Alignment:
Q  448 gatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    |||||||||||| ||||||||||||   ||| |||||||||| ||||||||| |||||||| |||||||||    
T  4587750 gatttctagtttaatcttgcaagcaacgtttaaaaactagtcatattgtttaccaaaaacaccggtaaaca 4587680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 662
Target Start/End: Original strand, 21821848 - 21821907
Alignment:
Q  603 ccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| ||| ||||||||| |||||||||| | |||||||||||||||||| |||||    
T  21821848 ccgattttgtgggattgtgttaggcccaaccacgatttctaagatggtatcagagcctct 21821907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 21861326 - 21861396
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||| ||| |||| |||| ||| ||||||||| |||||||||| | |||||||||||||||||| ||||||    
T  21861326 accttacaagccggttttgtgggattgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 21861396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 25620168 - 25620238
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  25620168 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctc 25620238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 1596649 - 1596695
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| ||| |||||||| |||||||||||||||||| ||||||    
T  1596649 ttgtgttaggcctaaccacaatttctaagatggtatcagagcctctc 1596695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 33834247 - 33834293
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  33834247 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 33834293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 33996339 - 33996293
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  33996339 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctctc 33996293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 602 - 656
Target Start/End: Complemental strand, 44874621 - 44874567
Alignment:
Q  602 gccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||||||||||  |||||||| ||| ||||||||  |||||||||||||||||    
T  44874621 gccgattttatgggcttgtgttaggccaaaccacaatgtctaagatggtatcaga 44874567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 240522 - 240563
Alignment:
Q  477 tttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||||||||||||||||| |||||| | |||||||||    
T  240522 tttaaaactagtcttattgtttaccaaaaataccggtaaaca 240563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 10882267 - 10882222
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||||||||| | |||||||||||||||||| |||||    
T  10882267 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 10882222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 40746297 - 40746366
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||| | ||||||||| |||  |||||||| |||||||||||| |||||| ||||||| ||| |||||    
T  40746297 acctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaatatggtattagagcctct 40746366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 83 - 285
Target Start/End: Original strand, 22317345 - 22317550
Alignment:
Q  83 tgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgttta 182  Q
    ||||||||| |||||||||||||||| || |||||| ||||| | || |||| |||||||   |||| |||||||||| |||||||||| ||||||| ||    
T  22317345 tgtaatccagagtgattatagtgaaatcccttggaagtgcaatgagactggactactcctggattgtaggaggaaccagtataaaattgttttgtgtcta 22317444  T
Q  183 cttcctttctct--gtctctttatctt-gtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttt 279  Q
    ||| || ||  |  ||||||||||||| |||||||||| ||||||||||||||||||||  |   |||||||||  |||||||| ||||||||||||| |    
T  22317445 ctttctctcgtttcgtctctttatctttgtgttctgtacttaatccgctgcattcagactctatatcaaaatctgtatacctcatattctgatcaagtct 22317544  T
Q  280 taacac 285  Q
    ||||||    
T  22317545 taacac 22317550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 661
Target Start/End: Original strand, 35788691 - 35788759
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctc 661  Q
    |||||||| |||| ||||||||  |||||||| |||||||||| | |||||||||||||||||| ||||    
T  35788691 acctcacaagccggttttatggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctc 35788759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 22223455 - 22223530
Alignment:
Q  96 gattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattg 171  Q
    ||||||||||||| || |||||| |||||| ||| | || ||||||| |||||| |||||||||| ||||||||||    
T  22223455 gattatagtgaaatcccttggaagtgcaagaggacttgactactcctgtgttgtgggaggaaccagtataaaattg 22223530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 593 - 656
Target Start/End: Complemental strand, 53828575 - 53828512
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||| | ||||||||| |||  |||||||| |||||||||||| ||||||||||||||||||    
T  53828575 acctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaagatggtatcaga 53828512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 663
Target Start/End: Complemental strand, 22231360 - 22231290
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  22231360 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctc 22231290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 646
Target Start/End: Original strand, 21685030 - 21685083
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaaga 646  Q
    |||||||| ||||||||| |||  ||||||||||||||||||||| ||||||||    
T  21685030 acctcacaagccgattttgtggggttgtgttaagcccaaccacaatttctaaga 21685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 662
Target Start/End: Original strand, 22445508 - 22445553
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||    
T  22445508 ttgtgttagacccaaccacaaattctaagatggtatcagagcctct 22445553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 518
Target Start/End: Complemental strand, 42454625 - 42454556
Alignment:
Q  449 atttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||||||||| |||||| |  | |||||||||| |||||||||||| || ||||| |||||||||    
T  42454625 atttctagtttgatcctgcaagtaacaatttaaaactaatcttattgtttaccacaaacaccggtaaaca 42454556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 617 - 669
Target Start/End: Complemental strand, 40717469 - 40717417
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctcaaatat 669  Q
    |||||||| |||||||||| | |||||||||||||||||| |||||| |||||    
T  40717469 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaatat 40717417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 41635658 - 41635729
Alignment:
Q  447 ggatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    |||||||||||| |||||| |||| |  | ||||||||||||||||| ||||  |||||||| |||||||||    
T  41635658 ggatttctagttcgatctttcaagtaacaatttaaaactagtcttatggttttccaaaaacaccggtaaaca 41635729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 661
Target Start/End: Original strand, 4464330 - 4464395
Alignment:
Q  596 tcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctc 661  Q
    ||||| ||||||||| |||  || |||||  ||||||||| |||||||||||||||||||| ||||    
T  4464330 tcacaagccgattttgtggggttttgttagacccaaccacgaattctaagatggtatcagagcctc 4464395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Complemental strand, 6666687 - 6666618
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    ||||||||  ||| |||| ||| ||||| ||| |||||||||| | |||||||||||||| |||||||||    
T  6666687 acctcacaaaccggttttgtgggattgttttaggcccaaccacgatttctaagatggtattagaacctct 6666618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Complemental strand, 14783239 - 14783170
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||| ||||||||||| |||||    
T  14783239 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 14783170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 18553126 - 18553065
Alignment:
Q  447 ggatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaaca 508  Q
    |||||||||||||||||   |||| |  |||||||||||||||||||||||||  |||||||    
T  18553126 ggatttctagtttgatcccacaagtaacattttaaaactagtcttattgtttacaaaaaaca 18553065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 21823430 - 21823393
Alignment:
Q  477 tttaaaactagtcttattgtttatcaaaaacatcggta 514  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  21823430 tttaaaactagtcttattgtttaccaaaaacaccggta 21823393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 35797005 - 35796960
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||||||||||| || | |||||||||||||||||| |||||    
T  35797005 ttgtgttaagcccaactaccatttctaagatggtatcagagcctct 35796960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 53814957 - 53814912
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    ||||||||||||||||||| | |||||| ||||||||||| |||||    
T  53814957 ttgtgttaagcccaaccacgatttctaatatggtatcagagcctct 53814912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 9e-29; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 94 - 307
Target Start/End: Complemental strand, 8685061 - 8684845
Alignment:
Q  94 gtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctc 193  Q
    ||||||||||||||| || |||||| |||||||||| |||| ||||||| |||||| |||||||||| ||||||||||| || | | | ||| ||||  |    
T  8685061 gtgattatagtgaaatcccttggaagtgcaaggggactggactactcctgtgttgtgggaggaaccactataaaattgcattatatctgctttcttttcc 8684962  T
Q  194 tgtctctttatc-ttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttttaacaca--gaaa 290  Q
    | | |||||||| || ||||||||  |||||  ||| || |||||| ||| |||||||| | ||||||||||||| ||| ||||||||||||||  ||||    
T  8684961 tttatctttatctttatgttctgttcttaatttgctacaatcagactatgtgtcaaaatttgcatacctcagattatgaccaagttttaacacacggaaa 8684862  T
Q  291 aagaaactacaaaaagc 307  Q
    ||||| || ||||||||    
T  8684861 aagaagctgcaaaaagc 8684845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 83 - 305
Target Start/End: Original strand, 16152959 - 16153186
Alignment:
Q  83 tgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgttta 182  Q
    |||||| || ||||||||||||| || || || ||| || |||||||||||| ||||||| |||||| | |||||| | ||||||||||||||  || |     
T  16152959 tgtaattcagagtgattatagtgtaatccctttgaagtgaaaggggattggactactcctctgttgtggaaggaactagtataaaattgctttacgtctg 16153058  T
Q  183 ctt--cctttctctgtctctttatct-tgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttt 279  Q
    |||   ||||| || ||||||||| | ||||||||||| || ||||||||||||||||   || |||  | ||||||||||||| ||| ||| |||| ||    
T  16153059 ctttctctttccctatctctttatttgtgtgttctgtactttatccgctgcattcagatgttgtgtcggattctacatacctcaaattatgaccaagctt 16153158  T
Q  280 taa--cacagaaaaagaaactacaaaaa 305  Q
    | |  ||||||||||||| |||||||||    
T  16153159 tgactcacagaaaaagaatctacaaaaa 16153186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 26655336 - 26655421
Alignment:
Q  94 gtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgt 179  Q
    ||||||||||||||| || ||| || |||||||||| ||||  |||||| |||||| |||||||||| ||||||||||||||||||    
T  26655336 gtgattatagtgaaatcccttgaaagtgcaaggggactggaccactcctgtgttgtgggaggaaccagtataaaattgctttgtgt 26655421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 17418208 - 17418295
Alignment:
Q  83 tgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaatt 170  Q
    ||||||| | ||||||||||||||||  | ||||||  ||||||||| |||| ||||||| |||||| ||||||||||||||||||||    
T  17418208 tgtaatcaagagtgattatagtgaaattccttggaagcgcaaggggactggactactcctgtgttgtgggaggaaccaatataaaatt 17418295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 21823053 - 21822968
Alignment:
Q  82 ctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    |||||||| | |||||||||||||||| || |||||| ||||| |||| |||| ||||||| |||||| ||||||||| |||||||    
T  21823053 ctgtaatcgagagtgattatagtgaaatcccttggaagtgcaatgggactggactactcctgtgttgtgggaggaaccgatataaa 21822968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 24216647 - 24216772
Alignment:
Q  52 agaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcg 151  Q
    |||||||||| ||||| ||| |||||  || |||||| || |||||||||| | |||||| ||| || |||| ||||| |||| ||||||| |||||| |    
T  24216647 agaagtctataggaagggtccttgatcaatttgtaattcagagtgattatattaaaaccctttgcaagtgcagggggactggactactcctgtgttgtgg 24216746  T
Q  152 gaggaaccaatataaaattgctttgt 177  Q
     || |||||  |||||||||||||||    
T  24216747 aagaaaccagaataaaattgctttgt 24216772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 35406103 - 35406173
Alignment:
Q  448 gatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    |||||||| | ||||| ||||||||   |||||||||||||||||||||||| |||||| | |||||||||    
T  35406103 gatttctattctgatcctgcaagcaacgttttaaaactagtcttattgtttaccaaaaaaaccggtaaaca 35406173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 656
Target Start/End: Original strand, 13210584 - 13210621
Alignment:
Q  619 gtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||| |||||||||||||||||||||||||||||||    
T  13210584 gtgttaggcccaaccacaaattctaagatggtatcaga 13210621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 40149264 - 40149219
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||    
T  40149264 ttgtgttaggcccaaccacaatttctaagatggtatcagagcctct 40149219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 26653991 - 26654067
Alignment:
Q  51 gagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggg 127  Q
    ||||||||| ||||||| ||| ||||   || |||||||||||||||||||||||||| |  |||||| ||||||||    
T  26653991 gagaagtctcttggaagtgtccttgaccaatttgtaatccaaagtgattatagtgaaatcacttggaagtgcaaggg 26654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 660
Target Start/End: Complemental strand, 93655 - 93612
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacct 660  Q
    |||||||| |||||||||| | ||||||||||||||||||||||    
T  93655 ttgtgttaggcccaaccacgatttctaagatggtatcagaacct 93612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 508
Target Start/End: Complemental strand, 21625213 - 21625154
Alignment:
Q  449 atttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaaca 508  Q
    ||||||||||||||| | |||| |  |||||||||||||||||||||||||  |||||||    
T  21625213 atttctagtttgatcatacaagtaacattttaaaactagtcttattgtttactaaaaaca 21625154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 21770295 - 21770366
Alignment:
Q  96 gattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    ||||||||||||| |  || ||| |||||||||| |||| ||||||  |||||| |||||||||||||||||    
T  21770295 gattatagtgaaatctcttagaagtgcaaggggactggattactcccatgttgtgggaggaaccaatataaa 21770366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 656
Target Start/End: Complemental strand, 28407845 - 28407782
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | ||||||||||||||||||    
T  28407845 acctcacaagccggttttgtggagttgtgttaggcccaaccacgatttctaagatggtatcaga 28407782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 31483310 - 31483251
Alignment:
Q  447 ggatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaa 506  Q
    ||||||||||||||||| ||||||||   ||| |||||||||||| ||||||| ||||||    
T  31483310 ggatttctagtttgatcatgcaagcaacttttaaaaactagtcttcttgtttaccaaaaa 31483251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 656
Target Start/End: Complemental strand, 40379496 - 40379433
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | ||||||||||||||||||    
T  40379496 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcaga 40379433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 2029801 - 2029871
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||| ||| |||||||||| | |||||||||||||||||| ||||||    
T  2029801 acctcacaagccggttttgtggggttgttttaggcccaaccacgatttctaagatggtatcagagcctctc 2029871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 14466438 - 14466392
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  14466438 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 14466392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 16419299 - 16419369
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||| ||| |||||||||| | |||||||||||||||||| ||||||    
T  16419299 acctcacaagccggttttgtggggttgtattaggcccaaccacgatttctaagatggtatcagagcctctc 16419369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 19564029 - 19563955
Alignment:
Q  93 agtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    |||||||||| ||||  || |||||| |||||||||||||||  |||| | |||||| |||||||||| ||||||    
T  19564029 agtgattataatgaattcccttggaagtgcaaggggattggaccactcatgtgttgtgggaggaaccagtataaa 19563955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 20515848 - 20515886
Alignment:
Q  480 aaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  20515848 aaaactagtcttattgtttaccaaaaacaccggtaaaca 20515886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 31475600 - 31475539
Alignment:
Q  447 ggatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaaca 508  Q
    ||||||||| ||||||| ||||||||   ||| |||||||||||| ||||||| ||||||||    
T  31475600 ggatttctactttgatcatgcaagcaacttttaaaaactagtcttcttgtttaccaaaaaca 31475539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 167
Target Start/End: Complemental strand, 22747932 - 22747793
Alignment:
Q  28 tcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggg 127  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||| |||| | || |||||||| | || |||||||||||| || |||||| ||||||||    
T  22747932 tcttgcagttgtgcttgagcattgagaagtctcttggaagagtccttgagaaatttgtaatcctatgttattatagtgaaatcccttggaagtgcaaggg 22747833  T
Q  128 gattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    || |||| ||||| | |||| | |||||||||||||||||    
T  22747832 gactggactactcttgtgttatgggaggaaccaatataaa 22747793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 94 - 271
Target Start/End: Complemental strand, 9823735 - 9823558
Alignment:
Q  94 gtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctc 193  Q
    ||||| ||||||||| || ||| || ||||||||| ||||| |||| || |||||| ||||||| || |||||||||| ||| ||| | ||| || ||||    
T  9823735 gtgatgatagtgaaatcccttgaaagtgcaagggggttggactacttctgtgttgtgggaggaatcagtataaaattgttttatgtctgctttctctctc 9823636  T
Q  194 tgtctctttatc-ttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctga 271  Q
    |||||||||||| || |||||| || |||| ||  |||||||||||  ||||||| ||| | |||||||||||||||||    
T  9823635 tgtctctttatctttatgttctatacttaa-ccattgcattcagactctgagtcagaatatgcatacctcagattctga 9823558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 285
Target Start/End: Original strand, 19570286 - 19570483
Alignment:
Q  93 agtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttg----tgtttacttcct 188  Q
    |||||||||||||||| || ||| || ||||| | || |||| ||||||| |||||| |||||||| ||||||||||| |||||    || || ||  ||    
T  19570286 agtgattatagtgaaatccattgaaagtgcaatgagactggactactcctctgttgtgggaggaacaaatataaaattcctttgttcctgctttctctct 19570385  T
Q  189 ttctctgtctctttatctt-gtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttttaacac 285  Q
     |||||||||||||| ||| ||||| ||||||||||| | |||||||| ||  ||  ||| |||||  |||||| ||||||||||||||  |||||||    
T  19570386 atctctgtctctttaacttagtgttttgtatttaatctgttgcattcatactctgtatcagaatctttataccttagattctgatcaagacttaacac 19570483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 24531631 - 24531701
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| ||||||||| |||  |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  24531631 acctcacaagccgattttgtggggttgtgttatgcccaaccacgatttctaagatggtatcagagcctctc 24531701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 24885900 - 24885985
Alignment:
Q  93 agtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgt 179  Q
    |||||||||||||||| || |||||| ||||| |||||| ||||||| || |||||| |||| ||||| ||| ||||||||||||||    
T  24885900 agtgattatagtgaaatcccttggaagtgcaaagggattagaatacttctgtgttgtaggagaaaccattat-aaattgctttgtgt 24885985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 593 - 662
Target Start/End: Complemental strand, 18333751 - 18333682
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| |||||||||||||||||||| |||||    
T  18333751 acctcacaagccggttttgtggggttgtgttaggcccaaccacgaattctaagatggtatcagagcctct 18333682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 8098349 - 8098418
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  ||||||||||||||||||| | |||||| ||||||||||| |||||    
T  8098349 acctcacaagccggttttgtggggttgtgttaagcccaaccacgatttctaatatggtatcagagcctct 8098418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 661
Target Start/End: Complemental strand, 41667045 - 41666977
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctc 661  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||||||||||||||| ||||    
T  41667045 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctc 41666977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 26013289 - 26013218
Alignment:
Q  96 gattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    ||||||||||||| || ||| || ||||||| ||||||| |||||||   |||| |||||||||||||||||    
T  26013289 gattatagtgaaatcccttgaaagtgcaaggagattggactactcctggtttgtaggaggaaccaatataaa 26013218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 24528572 - 24528642
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||||||| |||||||||  | |||||||||||||||||| ||||||    
T  24528572 acctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagcctctc 24528642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 30985816 - 30985885
Alignment:
Q  448 gatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    |||| |||||||||||| |||||||  ||||||||| |||| ||||| |||||||||||||  ||||||||    
T  30985816 gattcctagtttgatct-gcaagcaacattttaaaattagtattattatttatcaaaaacacaggtaaaca 30985885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 2063762 - 2063717
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||||||||| | |||||||||||||||||| |||||    
T  2063762 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 2063717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 12046616 - 12046493
Alignment:
Q  190 tctctgtctctttatctt-gtgttctgtattt-aatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagtttt--aaca- 284  Q
    |||||||||||||||||| ||||| ||||||| ||| | ||||||||||||  ||||||| ||||| ||||| |||| || ||| || |||||  ||||     
T  12046616 tctctgtctctttatctttgtgttatgtattttaatacactgcattcagactctgagtcagaatctgcatacgtcaggttatgaccaggtttttaaacac 12046517  T
Q  285 -cagaaaaagaaactacaaaaagc 307  Q
     |||||||| |||||| |||||||    
T  12046516 tcagaaaaataaactataaaaagc 12046493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 646
Target Start/End: Complemental strand, 18333517 - 18333464
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaaga 646  Q
    |||||||| |||| |||| |||  |||||||| |||||||||||||||||||||    
T  18333517 acctcacaagccggttttgtggggttgtgttaggcccaaccacaaattctaaga 18333464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Complemental strand, 21209973 - 21209904
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  ||||||||||||||||||| | |||||| ||||||| ||| |||||    
T  21209973 acctcacaagccggttttgtggggttgtgttaagcccaaccacgatttctaatatggtattagagcctct 21209904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 24163122 - 24163057
Alignment:
Q  98 ttatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaata 163  Q
    ||||||||||| || |||||| |||||||||| |||| |||||| || ||||  ||||||||||||    
T  24163122 ttatagtgaaatccattggaagtgcaaggggactggactactccatttttgtaagaggaaccaata 24163057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 24487673 - 24487628
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    ||||||||||||||||||| | |||||| ||||||||||| |||||    
T  24487673 ttgtgttaagcccaaccacgatttctaatatggtatcagagcctct 24487628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 18565493 - 18565342
Alignment:
Q  28 tcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggg 127  Q
    |||||||| ||||||| ||||  ||||||||| |||| || ||| ||||   |  ||||||||| |||||||||||||||| || |||||||||||||||    
T  18565493 tcttgcagttgtgcttgagcaaagagaagtctcttggtagtgtccttgagcaagttgtaatccatagtgattatagtgaaatccattggaaatgcaaggg 18565394  T
Q  128 gattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgt 179  Q
    || |||| ||||| | |||||| |||||||| | ||||||||||||||||||    
T  18565393 gactggactactcttgtgttgtgggaggaactagtataaaattgctttgtgt 18565342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 97 - 307
Target Start/End: Original strand, 23433630 - 23433843
Alignment:
Q  97 attatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctctgt 196  Q
    |||||||||||| || |||||| |||||||| | |||| ||||||| |||||| |||||||||| ||||||||||| || | | |  || || |  || |    
T  23433630 attatagtgaaatcccttggaagtgcaagggaactggactactcctgtgttgtgggaggaaccactataaaattgcattatatatgatttctcttccttt 23433729  T
Q  197 ctctttatc-ttgtgttctgtatttaatccgctgcattcagaccatgagtcaaaatctacatacctcagattctgatcaagttttaacaca--gaaaaag 293  Q
     |||||||| || ||||||||  |||||||||| || |||||  ||| |||||||| | ||||| ||||||| ||| ||||||||||||||  |||||||    
T  23433730 atctttatctttatgttctgttcttaatccgctacaatcagaatatgtgtcaaaatttgcatacttcagattatgaccaagttttaacacacggaaaaag 23433829  T
Q  294 aaactacaaaaagc 307  Q
    || |||||||||||    
T  23433830 aagctacaaaaagc 23433843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 33053709 - 33053638
Alignment:
Q  447 ggatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||||||||||| |||||| |  | ||||||||||||||||||||||| |||||||| |||||||||    
T  33053709 ggatttctagtttgatcctgcaagtaacaatttaaaactagtcttattgtttaccaaaaacaccggtaaaca 33053638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 13644727 - 13644650
Alignment:
Q  94 gtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattg 171  Q
    ||||||||||||||| || ||| || |||||| ||| |||| ||||||| |||||| |||||||||| |||| |||||    
T  13644727 gtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtatacaattg 13644650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 13745152 - 13745075
Alignment:
Q  94 gtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattg 171  Q
    ||||||||||||||| || ||| || |||||| ||| |||| ||||||| |||||| |||||||||| |||| |||||    
T  13745152 gtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtatacaattg 13745075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 597 - 661
Target Start/End: Original strand, 38476074 - 38476138
Alignment:
Q  597 cacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctc 661  Q
    |||| |||| |||| ||| ||| ||||| |||||||||||| |||||||||||||||||| ||||    
T  38476074 cacaagccggttttgtgggattatgttaggcccaaccacaatttctaagatggtatcagagcctc 38476138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 656
Target Start/End: Original strand, 12317090 - 12317141
Alignment:
Q  605 gattttatggcattgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||| ||| ||||||||| |||||||||| | ||||||||||||||||||    
T  12317090 gattttgtgggattgtgttaggcccaaccacgatttctaagatggtatcaga 12317141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 652
Target Start/End: Original strand, 38475803 - 38475838
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtat 652  Q
    |||||||| |||||||||||||||||||||||||||    
T  38475803 ttgtgttaggcccaaccacaaattctaagatggtat 38475838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 602 - 656
Target Start/End: Complemental strand, 422496 - 422442
Alignment:
Q  602 gccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    ||||||||| |||  |||||||  |||||||||||| ||||||||||||||||||    
T  422496 gccgattttgtggggttgtgtttggcccaaccacaatttctaagatggtatcaga 422442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 663
Target Start/End: Complemental strand, 10615180 - 10615138
Alignment:
Q  621 gttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||    
T  10615180 gttaagcccaaccacaatttctaagatggtgtcagagcctctc 10615138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 11232222 - 11232176
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  11232222 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 11232176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 11232457 - 11232411
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  11232457 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 11232411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 36917467 - 36917421
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||||    
T  36917467 ttgtgttaagcacaaccaccatttctaagatggtatcagagcctctc 36917421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 508
Target Start/End: Complemental strand, 13109668 - 13109635
Alignment:
Q  475 attttaaaactagtcttattgtttatcaaaaaca 508  Q
    ||||||||||||||||||||||||| ||||||||    
T  13109668 attttaaaactagtcttattgtttaccaaaaaca 13109635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Original strand, 20301317 - 20301362
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||||||||| | |||||||||||||||||| |||||    
T  20301317 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 20301362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Original strand, 21087949 - 21087994
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||||||||| | |||||||||||||||||| |||||    
T  21087949 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 21087994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 37001258 - 37001327
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | ||| |||||||||||||| |||||    
T  37001258 acctcacaagccggttttgtggagttgtgttaggcccaaccacgatttcaaagatggtatcagagcctct 37001327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Original strand, 41790714 - 41790759
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||||||||| | |||||||||||||||||| |||||    
T  41790714 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 41790759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 382332 - 382026
Alignment:
Q  7 agtgtccttgagcaagaaatgtcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtga 106  Q
    |||||||| ||||| |||||   |||||| ||||||| |||||| |||||||| ||||||||||| ||||   || |||||||   ||||||||||||||    
T  382332 agtgtcctagagcaggaaatcgattgcagttgtgcttgagcattaagaagtctcttggaagagtccttgagcaatttgtaatcatgagtgattatagtga 382233  T
Q  107 aacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctc--tgtctctttat 204  Q
    || |  || ||| |||||||||| |||| ||||||| |||||| | |||||| | ||||  |||| ||||||| | ||  || ||||  | |||||||||    
T  382232 aatctcttagaactgcaaggggagtggactactcctgtgttgtggaaggaactagtatatgattgttttgtgtctgctatctctctctatatctctttat 382133  T
Q  205 c-ttgtgttctgtatttaatccgctgcattcagac-catgagtcaaaatctacatacctcagattctgatcaagtttt--aaca--cagaaaaagaaact 298  Q
    | ||||||| | || ||||||| |   |||||||| | ||||||| ||||| ||||||||||||||||| ||||||||  ||||  ||||||||||||||    
T  382132 ctttgtgttatatacttaatccacaatattcagactcttgagtcacaatctgcatacctcagattctgaccaagtttttaaacactcagaaaaagaaact 382033  T
Q  299 acaaaaa 305  Q
     ||||||    
T  382032 gcaaaaa 382026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 1190 - 980
Alignment:
Q  28 tcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggg 127  Q
    |||||||| ||||||| ||||||| ||||||| ||||||| ||| |||| | || |||||||    ||||| ||||||||| |  |||||| || ||||     
T  1190 tcttgcagttgtgcttgagcattgcgaagtctcttggaagtgtccttgagaaatttgtaatcgtgtgtgatcatagtgaaatctcttggaagtgtaagga 1091  T
Q  128 gattggaatactcctttgttgtcggaggaaccaatataaaattgctttgtgttt-acttc-ctttctctgtctctttatct-tgtgttctgtatttaatc 224  Q
    || |||| |||||||   |||| ||||||||||||||||||||| |||||||||  |||| |||||| | ||||||||| | |||||||| ||| |||||    
T  1090 gactggactactcctggattgtaggaggaaccaatataaaattgttttgtgtttgccttctctttctttatctctttatatgtgtgttctatatctaatc 991  T
Q  225 cgctgcattca 235  Q
    |||| ||||||    
T  990 cgctacattca 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 12439850 - 12439999
Alignment:
Q  28 tcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggg 127  Q
    |||||||| ||||||| ||||||||||||||| ||| ||| ||  ||||    | ||||||||| |||||||||||||||| || |||||| |||||| |    
T  12439850 tcttgcagttgtgcttgagcattgagaagtctcttgaaagtgtgcttgagcattttgtaatccatagtgattatagtgaaatcccttggaagtgcaagag 12439949  T
Q  128 gattggaatactcctttgttgtcggaggaaccaatataaaattgctttgt 177  Q
    ||||||| |||||||   |||| |||||||| | |||||||||| |||||    
T  12439950 gattggagtactcctgaattgtgggaggaactagtataaaattgttttgt 12439999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 51589838 - 51589907
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| ||||||||| |||  |||||||| |||||||||| | |||||| ||||||||||| |||||    
T  51589838 acctcacaagccgattttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 51589907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 595 - 663
Target Start/End: Original strand, 38668159 - 38668227
Alignment:
Q  595 ctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||| ||| ||||| |||  |||||||| |||||| ||||| |||||||||||||||||| ||||||    
T  38668159 ctcacaagccaattttgtggggttgtgttaggcccaatcacaatttctaagatggtatcagagcctctc 38668227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 519
Target Start/End: Original strand, 4521868 - 4521939
Alignment:
Q  448 gatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaacag 519  Q
    ||||||||||||||| || |||| |  |||||||||||| |||||||||||| ||||| || || |||||||    
T  4521868 gatttctagtttgattttccaagtaacattttaaaactaatcttattgtttaccaaaatcaccgataaacag 4521939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 663
Target Start/End: Complemental strand, 4113058 - 4112988
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | ||||||||||||||| || ||||||    
T  4113058 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcggagcctctc 4112988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 519
Target Start/End: Original strand, 24115483 - 24115553
Alignment:
Q  449 atttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaacag 519  Q
    ||||||||| | ||| | ||||||  |||||||||||||| |||||||||| |||||||| || |||||||    
T  24115483 atttctagtattatcctacaagcaacattttaaaactagttttattgtttaccaaaaacaccgataaacag 24115553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 24634052 - 24634090
Alignment:
Q  480 aaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  24634052 aaaactagtcttattgtttacgaaaaacatcggtaaaca 24634090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 44787643 - 44787681
Alignment:
Q  480 aaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  44787643 aaaactagtcttgttgtttatcaaaaacaccggtaaaca 44787681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 646
Target Start/End: Complemental strand, 4112592 - 4112539
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaaga 646  Q
    |||||||| ||||||||||||| ||||||||| || ||||||| | ||||||||    
T  4112592 acctcacaagccgattttatgggattgtgttaggcacaaccacgatttctaaga 4112539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 11324673 - 11324636
Alignment:
Q  481 aaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  11324673 aaactagtcttattgtttaccaaacacatcggtaaaca 11324636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 11482694 - 11482657
Alignment:
Q  481 aaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  11482694 aaactagtcttattgtttaccaaacacatcggtaaaca 11482657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 646
Target Start/End: Complemental strand, 31181565 - 31181512
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaaga 646  Q
    |||||||| || | ||||||||  |||||||| |||||||||||||||||||||    
T  31181565 acctcacaagctggttttatggggttgtgttaggcccaaccacaaattctaaga 31181512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 448 - 510
Target Start/End: Complemental strand, 16434185 - 16434123
Alignment:
Q  448 gatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatc 510  Q
    |||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  16434185 gatttctagtttaatcctgcaagcaacattttaaaactagtcttattgtttatcaaaaacatc 16434123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 10481603 - 10481532
Alignment:
Q  96 gattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    ||||||||||||| || ||||||||||||||||| || | ||||||| |||||| ||||||||||| |||||    
T  10481603 gattatagtgaaatcccttggaaatgcaaggggactgaactactcctgtgttgtgggaggaaccaaaataaa 10481532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 22259488 - 22259559
Alignment:
Q  447 ggatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||||||| ||| |||||||| |  |||||||||||||||||||||||  ||||||| |||||||||    
T  22259488 ggatttctagtttcatcctgcaagcaattatttaaaactagtcttattgtttacaaaaaacagcggtaaaca 22259559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 17206457 - 17206315
Alignment:
Q  28 tcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggg 127  Q
    ||||| || ||||||| ||||||||||||||  ||||||||||| |||||   | ||||||||| ||||||| | |||||| || |||||| |||||| |    
T  17206457 tcttgtagttgtgcttgagcattgagaagtcacttggaagagtccttgatcagtatgtaatccagagtgattgtggtgaaatcccttggaagtgcaagtg 17206358  T
Q  128 gattggaatactcctttgttgtcggaggaaccaatataaaatt 170  Q
    |  || | ||||||| | |||| |||||||| | |||||||||    
T  17206357 ggctgaactactcctatattgtgggaggaactagtataaaatt 17206315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 33494571 - 33494640
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | ||||||||||||||||||||||||    
T  33494571 acctcacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagaacctct 33494640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 663
Target Start/End: Original strand, 3680046 - 3680114
Alignment:
Q  595 ctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||| | ||||||| |||  |||||||| |||||||||||| |||||||||||||||||| ||||||    
T  3680046 ctcacaagtcgattttgtggggttgtgttaggcccaaccacaatttctaagatggtatcagaccctctc 3680114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 34659434 - 34659350
Alignment:
Q  84 gtaatccaaagtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaa 168  Q
    |||||||| |||||||||||||||| || || ||| | |||||||| |||| ||||| | |||||| |||||||||| |||||||    
T  34659434 gtaatccatagtgattatagtgaaatcccttagaagtacaaggggactggactactcttgtgttgtgggaggaaccagtataaaa 34659350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 455 - 518
Target Start/End: Complemental strand, 3634262 - 3634199
Alignment:
Q  455 agtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaacatcggtaaaca 518  Q
    ||||||||| |||||| | |  ||||||||||||||||||||||| |||||||| |||||||||    
T  3634262 agtttgatcctgcaagtaattatttaaaactagtcttattgtttaccaaaaacaccggtaaaca 3634199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 296
Target Start/End: Complemental strand, 19122548 - 19122392
Alignment:
Q  144 tgttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctctgt--ctctttatctt-gtgttctgtatttaatccgctgcattcagacca 240  Q
    |||||| |||||||| | ||||||| |||||||||| | ||| || |||||||  ||||||||||| |||  ||||||||||| ||||||||||| ||      
T  19122548 tgttgtgggaggaactagtataaaagtgctttgtgtctgctttctctctctgtgtctctttatctttgtgaactgtatttaattcgctgcattcacactc 19122449  T
Q  241 tgagtcaaaatctacatacctcagattctgatcaagtttta-acacagaaaaagaaa 296  Q
    | ||||| |||||  |||||||| ||| ||| ||| ||| | ||| |||||||||||    
T  19122448 taagtcagaatctgaatacctcatattatgaccaaatttaacacagagaaaaagaaa 19122392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 21689535 - 21689612
Alignment:
Q  94 gtgattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattg 171  Q
    ||||||||||||||| || |||||| || ||||||| |||| ||||||||  ||||  ||||||||| ||||||||||    
T  21689535 gtgattatagtgaaatcccttggaagtggaaggggactggactactccttgattgtaagaggaaccagtataaaattg 21689612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 661
Target Start/End: Complemental strand, 4868865 - 4868797
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctc 661  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||||||||||||||| ||||    
T  4868865 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctc 4868797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 661
Target Start/End: Complemental strand, 15082196 - 15082128
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctc 661  Q
    |||||||| |||| |||| ||| ||||||||| |||||| ||| | |||||| ||||||||||||||||    
T  15082196 acctcacaagccggttttgtgggattgtgttaggcccaaacacgatttctaatatggtatcagaacctc 15082128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 19730984 - 19730888
Alignment:
Q  28 tcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaa 124  Q
    |||||||| ||||||| ||||| ||||||||| ||||||| ||| || ||  || ||||||||   | ||||||||||||| || ||||||||||||    
T  19730984 tcttgcagttgtgcttgagcatagagaagtctcttggaagtgtccttaatcaatttgtaatcctgtgagattatagtgaaatcccttggaaatgcaa 19730888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 656
Target Start/End: Complemental strand, 8001578 - 8001539
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  8001578 ttgtgttaggcccaaccacaatttctaagatggtatcaga 8001539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 13353257 - 13353303
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  13353257 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 13353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 33796382 - 33796428
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  33796382 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 33796428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 8026421 - 8026490
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||| ||||||||||| |||||    
T  8026421 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 8026490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 27653249 - 27653318
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| | || |||| ||| ||||||||| |||||||||| | |||||| ||||||||||| |||||    
T  27653249 acctcacaagtcggttttgtgggattgtgttaggcccaaccacgatttctaatatggtatcagagcctct 27653318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 2212 - 2380
Alignment:
Q  7 agtgtccttgagcaagaaatgtcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtga 106  Q
    |||||||| || |||||| | | |||||| ||||||| |  ||| | |||||| ||||||||||| ||||   || ||||||||| ||||||||||||||    
T  2212 agtgtcctagatcaagaagtcttttgcagttgtgcttgacaattaataagtctcttggaagagtccttgagcaatttgtaatccagagtgattatagtga 2311  T
Q  107 aacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgcttt 175  Q
    || |  |||||| |||||||||| | || ||||| | |||| | |||||||||| ||||||||| ||||    
T  2312 aatcttttggaagtgcaaggggactagactactcatatgttctgggaggaaccagtataaaatttcttt 2380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 16201847 - 16201923
Alignment:
Q  98 ttatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattgctt 174  Q
    ||||||||||| || |||||| |||||||||| |||| ||||||| |||||| ||| |||||| |||||||||||||    
T  16201847 ttatagtgaaatcccttggaagtgcaaggggactggattactcctgtgttgtaggatgaaccagtataaaattgctt 16201923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 10878410 - 10878509
Alignment:
Q  28 tcttgcagctgtgctttagcattgagaagtctattggaagagtctttgatatatctgtaatccaaagtgattatagtgaaacccgttggaaatgcaaggg 127  Q
    ||||| || ||| ||| ||||||||||||||| ||||||||||| ||||   || ||||||||| |||||||||||||||| |  |||||| ||||||||    
T  10878410 tcttgtagttgttcttgagcattgagaagtcttttggaagagtccttgaacaatttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 10878509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 9272993 - 9273062
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  ||||||||||||||||||| | |||||| |||||||||||||||||    
T  9272993 acctcacaagccggttttgtggggttgtgttaagcccaaccaccatttctaatatggtatcagaacctct 9273062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 661
Target Start/End: Original strand, 16239623 - 16239691
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctc 661  Q
    |||||||| |||| |||| ||| ||||||||| |||||||||| | |||||||||||||||||| ||||    
T  16239623 acctcacaagccggttttgtgggattgtgttaggcccaaccacgatttctaagatggtatcagagcctc 16239691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 508
Target Start/End: Complemental strand, 17132530 - 17132470
Alignment:
Q  448 gatttctagtttgatcttgcaagcactattttaaaactagtcttattgtttatcaaaaaca 508  Q
    ||||| |||||||||| | ||||||  ||||||||||||||||||||||||| ||||||||    
T  17132530 gatttatagtttgatcctacaagcaacattttaaaactagtcttattgtttaccaaaaaca 17132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 27486608 - 27486662
Alignment:
Q  113 ttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    |||||| |||||||||| |||| ||||||||| |||| |||||||||||||||||    
T  27486608 ttggaagtgcaaggggactggactactcctttattgtgggaggaaccaatataaa 27486662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 54567924 - 54567994
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  54567924 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctc 54567994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 662
Target Start/End: Complemental strand, 1723128 - 1723059
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||||||||||||||| |||||    
T  1723128 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 1723059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 54368548 - 54368617
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| ||||||||  ||||||||  ||||||||| | |||||||||||||||||| |||||    
T  54368548 acctcacaagccggttttatggggttgtgttagacccaaccacgatttctaagatggtatcagagcctct 54368617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 11073896 - 11073825
Alignment:
Q  96 gattatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaa 167  Q
    ||||||||||||| |  || ||| |||||||||| |||| |||||||  ||||| |||||||||||||||||    
T  11073896 gattatagtgaaatctcttagaagtgcaaggggactggactactcctgcgttgttggaggaaccaatataaa 11073825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 656
Target Start/End: Original strand, 22729156 - 22729195
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  22729156 ttgtgttaggcccaaccacaatttctaagatggtatcaga 22729195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 21528692 - 21528777
Alignment:
Q  113 ttggaaatgcaaggggattggaatactccttt--gttgtcggaggaaccaatataaaattgctttgtgtttacttcctttctctgt 196  Q
    |||||| |||||||||| |||| |||| || |  ||||| |||||||||| |||||||||||||||||| | ||| || |||||||    
T  21528692 ttggaagtgcaaggggactggactactactatatgttgtaggaggaaccagtataaaattgctttgtgtctgctttctctctctgt 21528777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 45828075 - 45828121
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||||||    
T  45828075 ttgtgttaggccctaccacaatttctaagatggtatcagagcctctc 45828121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 11589817 - 11589886
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||| ||||||||||| |||||    
T  11589817 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 11589886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 654
Target Start/End: Original strand, 13824970 - 13825007
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatca 654  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  13824970 ttgtgttaagaccaaccacaaattctaagatgatatca 13825007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 656
Target Start/End: Complemental strand, 16926999 - 16926938
Alignment:
Q  595 ctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcaga 656  Q
    |||||| |||| |||| |||  ||||||||||| ||||||| | ||||||||||||||||||    
T  16926999 ctcacaagccggttttgtggggttgtgttaagctcaaccacgatttctaagatggtatcaga 16926938  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 20736632 - 20736705
Alignment:
Q  98 ttatagtgaaacccgttggaaatgcaaggggattggaatactcctttgttgtcggaggaaccaatataaaattg 171  Q
    ||||||||||| || ||| || |||||||||| |||| ||||| | |||| | |||||| ||||||||||||||    
T  20736632 ttatagtgaaatcccttgaaagtgcaaggggactggactactcatgtgttatgggaggagccaatataaaattg 20736705  T

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Target: scaffold0692 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 5782 - 5736
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  5782 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctctc 5736  T

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Target: scaffold0519 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 1972 - 2018
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  1972 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctc 2018  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 663
Target Start/End: Original strand, 14335 - 14405
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||| |||| |||  |||||||| ||||||||||   |||||||||||||||||| ||||||    
T  14335 acctcacaagccggttttgtggggttgtgttaggcccaaccacgttttctaagatggtatcagagcctctc 14405  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 81898 - 81944
Alignment:
Q  617 ttgtgttaagcccaaccacaaattctaagatggtatcagaacctctc 663  Q
    |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  81898 ttgtgttaggcccaaccacgatttctaagatggtatcagagcctctc 81944  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 56491 - 56560
Alignment:
Q  593 acctcacatgccgattttatggcattgtgttaagcccaaccacaaattctaagatggtatcagaacctct 662  Q
    |||||||| |||| |||| |||  |||||||| |||||||||| | |||||| ||||||||||| |||||    
T  56491 acctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 56560  T

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