View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733-Insertion-13 (Length: 575)
Name: NF1733-Insertion-13
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733-Insertion-13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Original strand, 41335374 - 41335941
Alignment:
| Q |
8 |
atgtaggcgttattggacaagagggggtgcattaagaaatgttcctgttggtggagggtgtcgtagaagcaaaaagaccaaaaagagtaacacctcttct |
107 |
Q |
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| T |
41335374 |
atgtaggcgttattggacaagagggggtgcattaagaaatgttcctgttggtggagggtgtcgtagaagcaaaaagaccaaaaagagtaacacctcttct |
41335473 |
T |
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| Q |
108 |
actccctccaaatctccaatatcaaatagtaatgacaaagattattcaacaagtgcaagtgcaatccattcaacttcaactcctcttggtgaattctcac |
207 |
Q |
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| T |
41335474 |
actccctccaaatctccaatatcaaatagtaatgacaaagattattcaacaagtgcaagtgcaatccattcaacttcaactcctcttggtgaattcttac |
41335573 |
T |
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| Q |
208 |
acccaactaatagacctaattacatgacatctcttcagaatctgaaccggttcggtgttggaaatatgtttcaaattggtgattatagttcaactactgg |
307 |
Q |
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| T |
41335574 |
acccaactaatagacctaattacatgacatctcttcagaatctgaaccggttcggtgttggaaatatgtttcaaattggtgattatagttcaactactgg |
41335673 |
T |
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| Q |
308 |
tggaggagaaggaggagttgtcgatcagtggagatttcagcagtttcctttcatgaataatggctttgattcaagtacttcaaatgtttctttcccattt |
407 |
Q |
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| T |
41335674 |
tggaggagaaggaggagttgtcgatcagtggagatttcagcagtttcctttcatgaataatggctttgattcaagtacttcaaatgtttctttcccattt |
41335773 |
T |
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| Q |
408 |
caaagtgaaattgttgaaccaacaactacttctagggttactactttgatgcctgcatcggttaaatcggaacacaacggaggttttaatctgcttagat |
507 |
Q |
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| T |
41335774 |
caaagtgaaattgttgaaccaacaactacttctagggttactactttgatgcctgcatcggttaaatcggaacacaacggaggttttaatcttcttagat |
41335873 |
T |
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| Q |
508 |
ctccaatgaatatgtcagagaataacaaccattacaataattcatggaatgattttcatggtcttgca |
575 |
Q |
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| T |
41335874 |
ctccaatgaatatgtcagagaataacaaccattacaataattcatggaatgattttcatggtcttgca |
41335941 |
T |
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Back To:
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Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 23663644 - 23663720
Alignment:
| Q |
8 |
atgtaggcgttattggacaagagggggtgcattaagaaatgttcctgttggtggagggtgtcgtagaagcaaaaaga |
84 |
Q |
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| T |
23663644 |
atgtaggcgttattggacaagagggggtgcacttagaaatgttccagttggtggagggtgtcgtagaaacaacaaga |
23663720 |
T |
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