View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1733-Insertion-14 (Length: 638)
Name: NF1733-Insertion-14
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733-Insertion-14 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 25 - 638
Target Start/End: Complemental strand, 45306166 - 45305555
Alignment:
| Q |
25 |
gggtgagcaaagggagccaaaatctcaaaacaaatnnnnnnngatctcaaaagtttttgttttcgagttgggttttggaggattttagagttgaagactt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45306166 |
gggtgagcaaagggagccaaaatctcaaaacaaataaaaaaagatctcaaaagtttttgttttcgagttgggttttggaggattttagagttgaagactt |
45306067 |
T |
|
| Q |
125 |
tggaaagcaaagtctatatttgatatatttnnnnnnnntaaaattaaagagcaacaatgcaattctaaacaacatcaaaatctttaaaatgactctataa |
224 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45306066 |
tggaaagtaaagtctatatttgatatatttaaaaaaaataaaattaaagagcaacaatgcaattctaaacaacatcaaaatctttaaaatgactctataa |
45305967 |
T |
|
| Q |
225 |
atgaagatgatatttgaacaaaacgtcaatgatttgaccagcttcctgaaacatatgcttccactaaacctctcttacagagacaatgttatataaatat |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
45305966 |
atgaagatgatatttgaacaaaacgtcaatgatttgaccagcttcctgaaacatatgcttccactaaacctctcttacagagacaatgtcata--aatat |
45305869 |
T |
|
| Q |
325 |
gtcataaacattgtatgaatttcttcctccttattagtaatcagttctttatcagtatgaattttagaaatgaaattcttcttccttcttagggaaggct |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305868 |
gtcataaacattgtatgaatttcttcctccttattagtaatcagttctttatcagtatgaattttagaaatgaaattcttcttccttcttagggaaggct |
45305769 |
T |
|
| Q |
425 |
tttggtgaaagaacttggtgtttttatgtccctctttcagccatctgaccttaactctttgactccaatatttttcttctagattcgaatttcatctgat |
524 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305768 |
tttggtgaaagaacttggtgtttttatatccctctttcagccatctgaccttaactctttgactccaatatttttcttctagattcgaatttcatctgat |
45305669 |
T |
|
| Q |
525 |
tctttcttctctttgatatttatttgatcaatggtcttaacattaggagcatggattctatttagcttaagtaactcagaactaatttgctctctgcatt |
624 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45305668 |
tctttcttctctttgatatttacttgatcaatggtcttaacattaggagcatggatgctatttagcttaagtaactcagaactaatttactctctgcatt |
45305569 |
T |
|
| Q |
625 |
tgttgaacttgcca |
638 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45305568 |
gtttgaacttgcca |
45305555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University