View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733-Insertion-15 (Length: 556)
Name: NF1733-Insertion-15
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733-Insertion-15 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 28 - 539
Target Start/End: Complemental strand, 7382804 - 7382280
Alignment:
| Q |
28 |
gttaagggttttatctatataacttgtaaccatagtataacgttacttcacttttcggtaccacaattatccaatgcccttcatcttaagtttcctgaat |
127 |
Q |
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| T |
7382804 |
gttaagggttttatctatataacttgtaaccatagtataacgttacttcacttttcggtaccacaattatccaatgcccttcatcttaagtttcctgaat |
7382705 |
T |
|
| Q |
128 |
gaaagcaacttcttggtttaatggcttaagaaatctatttataaacactggcagctataaaatattatttctacaaacaaatatgcttaaactgc-ttta |
226 |
Q |
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| T |
7382704 |
gaaagcaacttcttggtttaatggcttaagaaatctatttataaacactggcagctataaaatattatttctacaaaaaaatatgcttaaactgctttta |
7382605 |
T |
|
| Q |
227 |
aaatttcttatttatgtgc-------ttacaaagagtgctacaaaatatatttttattgatttgttaaaaataattaata----taaaacgtggtataaa |
315 |
Q |
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| T |
7382604 |
aaatttcttatttatgtgcttacaaattacaaagagtgctacaaaatatatttttattgatgtgttaaaaataattaatataattaaaacgtggtataaa |
7382505 |
T |
|
| Q |
316 |
-ttttattgcgccgttattattcattgggtacagacaatattttatttcaaaacttgatygtttctaatataatttacagtcgatgttataaacttttta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7382504 |
tttttattgcgccgttattattcattgggtacagacaatattttatttcaaaacttgatcgtttctaatataatttacagtcgatgttataaacttttta |
7382405 |
T |
|
| Q |
415 |
attgatttaaatttacatagtttttaaatatcaacttgagtttactcnnnnnnnntatcaacttgagtataatttattttttaaaagcaaactcaactac |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7382404 |
attgatttaaatttacatagtttttaaatatcaacttgagtttactcaaaaaaaatatcaacttgagtataatttattttttaaaagcaaactcaactac |
7382305 |
T |
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| Q |
515 |
acatgacactgatacattaaagatg |
539 |
Q |
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| T |
7382304 |
acatgacactgatacattaaagatg |
7382280 |
T |
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