View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733-Insertion-2 (Length: 409)
Name: NF1733-Insertion-2
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 100 - 338
Target Start/End: Complemental strand, 54243915 - 54243677
Alignment:
| Q |
100 |
taggaaaaggggataatgttgcttcaaaaaaccatgaaatggaaaagataaaaagggaggaggaagacaatgggagaggaagagcgtgagattaaaatgc |
199 |
Q |
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| T |
54243915 |
taggaaaaggggataatgttgcttcaaaaaaccatgaaatggaaaagataaaaagggaggaggaagacaatgggagaggaagagcgtgagattaaaatgc |
54243816 |
T |
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| Q |
200 |
gtcatattgtttgattttgactcggatatcctctgcgcgtaactacataaattaattacctcaagtaggataggtcctcaataggcggcaaagttttttc |
299 |
Q |
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| T |
54243815 |
gtcatattgtttgattttgactcggatatcctctgcacgtaactacataaattaattacctcaagcaggataagtcctcaataggtggcaaagtttttgc |
54243716 |
T |
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| Q |
300 |
tcaagatatttgacattgttgcattcccccaacaagacc |
338 |
Q |
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| T |
54243715 |
tgaagatatttgacattgttgcattcccccaacaagacc |
54243677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 54243632 - 54243570
Alignment:
| Q |
347 |
ttctagattcgattgattccaactacaacatgttcttgttgttctaatttattattttgttga |
409 |
Q |
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| T |
54243632 |
ttctagattcgattgattccaactacaacatgttcttgttgttctaatttatgattttgttga |
54243570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 54244031 - 54243992
Alignment:
| Q |
5 |
acatgtacttctctgagagattttgagtgccctgctcgaagt |
46 |
Q |
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| T |
54244031 |
acatgtacttctctgaga--ttttgagtgccctgctcgaagt |
54243992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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