View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733-Insertion-3 (Length: 556)
Name: NF1733-Insertion-3
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Complemental strand, 43207176 - 43206624
Alignment:
| Q |
8 |
gttgcgaaggcctttaaggttcttgccatttgtgaactctaagtaacatgtgaaacctnnnnnnnntcctaatttaaaagaacactaaatctcaaatctg |
107 |
Q |
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| T |
43207176 |
gttgcgaaggcctttaaggttcttgccatttgtgaactctaagtaacatgtgaaacctaaaaaaaatcctaatttaaaagaacactaaatctcaaatctg |
43207077 |
T |
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| Q |
108 |
taattgcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttttcagattttttactgcactgctctttagttt |
207 |
Q |
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| T |
43207076 |
taattgcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttttcagattttttactgcactgctctttagttt |
43206977 |
T |
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| Q |
208 |
tagttagtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatatttatcagttaaaaaattgta |
307 |
Q |
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| T |
43206976 |
tagttagtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatacttatgagttaaaaaattgta |
43206877 |
T |
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| Q |
308 |
ttatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtat----acaaaataggaagcctatgctaactat |
403 |
Q |
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| T |
43206876 |
ttatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtatatacacaaaataggaagcctatgctaactat |
43206777 |
T |
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| Q |
404 |
tgtgtactaactagtacaatagcacttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaactcctatatattgtaa |
503 |
Q |
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| T |
43206776 |
tgtgtactaactagtagaatagcacttgaactcaagtagcttgctaagcaagttacatagtctataatagaaatcaaagagaaactcctatatattgtaa |
43206677 |
T |
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| Q |
504 |
taaactgtatattgcatctcttaaagcttggtttcttgttttcatctttcttc |
556 |
Q |
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| T |
43206676 |
taaactgtatattgcatctcttaaagcttggtttcttgttttcatctttcttc |
43206624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 77 - 284
Target Start/End: Complemental strand, 43186484 - 43186277
Alignment:
| Q |
77 |
taatttaaaagaacactaaatctcaaatctgtaattgcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttt |
176 |
Q |
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| T |
43186484 |
taatttataagaacaataaattctaaatctgtaatttcacaaacctgtggtgcctcaaacatggcaaaaaatgaaaaacccataaac---aacatagttt |
43186388 |
T |
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| Q |
177 |
tcagattttttactgcactgctctttagttttagttagtttatttagaatgaacg----gtgcatgcaagttaattacttatagtttcatttgttaatac |
272 |
Q |
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| T |
43186387 |
tcagatttttgactgcactgttctttagttttagtta-tttgttcagaatgaatgaatcgtaaatgcaagttaattgtttatagtttgttttgttcataa |
43186289 |
T |
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| Q |
273 |
tttaataagcta |
284 |
Q |
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| T |
43186288 |
tttaataagcta |
43186277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 18832229 - 18832153
Alignment:
| Q |
429 |
ttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaactcctatatattgtaata |
505 |
Q |
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| T |
18832229 |
ttgaactctagtggcttgctatgcaagttacatagtctaaactaaaaaacaaagagaaactccgatttattgtaata |
18832153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 18835497 - 18835568
Alignment:
| Q |
306 |
tattatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtata |
377 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||| | | ||| ||||| ||| | |||||||| |
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| T |
18835497 |
tattatgaattgagagaagtgaatgaatactcattgtttgattgactagaatggttccgtatatcatgtata |
18835568 |
T |
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Back To:
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