View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733-Insertion-4 (Length: 345)
Name: NF1733-Insertion-4
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 1407621 - 1407283
Alignment:
| Q |
7 |
aataacaaggatttggttatggatatgtcggagacggttggatctccaaacmtggctgannnnnnnccattgttgaggttgattgatccacaaggcatca |
106 |
Q |
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| T |
1407621 |
aataacaaggatttggttatggatatgtcggagacggttggatctccaaacatggctgatttttttccattgttgaggttgattgatccacaaggcatca |
1407522 |
T |
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| Q |
107 |
aaaggacctatgtgttttatgtaggaaagttgtttggtatctttgacaatataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaa |
206 |
Q |
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| T |
1407521 |
aaaggacctatgtgttttatgtaggaaagttgtttggtatctttgacaacataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcgccaa |
1407422 |
T |
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| Q |
207 |
caacgatatgttagactcgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaarttcaacatttactacatgtattttcaaatctcttacta |
306 |
Q |
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| T |
1407421 |
caacgatatgttagactcgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttctaatctcttacta |
1407322 |
T |
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| Q |
307 |
tttacaatcatgatgtttgatctctctttctttagtcca |
345 |
Q |
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| T |
1407321 |
tttacaatcatgatgtttgatctctctttctttagtcca |
1407283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-151
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 1363803 - 1364121
Alignment:
| Q |
7 |
aataacaaggatttggttatggatatgtcggagacggttggatctccaaacmtggctgannnnnnnccattgttgaggttgattgatccacaaggcatca |
106 |
Q |
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| T |
1363803 |
aataacaaggatttggttatggatatgtcggagacggttggatctccaaacatggctgatttttttccattgttgaggttgattgatccacaaggcatca |
1363902 |
T |
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| Q |
107 |
aaaggacctatgtgttttatgtaggaaagttgtttggtatctttgacaatataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaa |
206 |
Q |
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| T |
1363903 |
aaaggacctatgtgttttatgtaggaaagttgtttggtatctttgacaacataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaa |
1364002 |
T |
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| Q |
207 |
caacgatatgttagactcgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaarttcaacatttactacatgtattttcaaatctcttacta |
306 |
Q |
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| T |
1364003 |
caacgatatgttagactccttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttctaa--tcttacta |
1364100 |
T |
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| Q |
307 |
tttacaatcatgatgtttgat |
327 |
Q |
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| T |
1364101 |
tttacaattatgatgtttgat |
1364121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 13 - 306
Target Start/End: Original strand, 1369357 - 1369656
Alignment:
| Q |
13 |
aaggatttggttatggatatgtcggagacggttggatctccaaacmtggctgannnnnnnccattgttgaggttgattgatccacaaggcatcaaaagga |
112 |
Q |
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| T |
1369357 |
aaggatttggttatgaatatggcagagacggttggaaagccaaacatggctgattttttcccattattgaggttgattgatccacaaggcatcaaaaaga |
1369456 |
T |
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| Q |
113 |
cctatgtgttttatgtaggaaagttgtttggtatctttgacaatataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaacaacga |
212 |
Q |
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| T |
1369457 |
cctatatgttttatattggaaagttgttcaatgtcttcgacaacataatcgaccaaaggttgaagttgcgagaagaggatggttttttcaccaacaacga |
1369556 |
T |
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| Q |
213 |
tatgttagactcgttgctcg------ctgaagaaaacaaaaaggagttggacagagaaaaarttcaacatttactacatgtattttcaaatctcttacta |
306 |
Q |
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| T |
1369557 |
catgctagactccttgctcgacattcctgaagaaaacagaaaggagttggatagagaaaaaattgaacatttattacatgtattttctaatcccttacta |
1369656 |
T |
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