View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733-Insertion-6 (Length: 720)
Name: NF1733-Insertion-6
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733-Insertion-6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 162 - 720
Target Start/End: Original strand, 51773194 - 51773762
Alignment:
| Q |
162 |
ctgtaagaagagcaataaatgaatcttaaagtgaagaacattaagtaggagctgattgtagagctgcactgggcctaattgctttcatttaatcattggg |
261 |
Q |
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| T |
51773194 |
ctgtaagaagaacaataaatgaatcttaaagtgaagaacattaagtaggagctgattgtagagctgcactgggcctaattgatttcatttaatcattggg |
51773293 |
T |
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| Q |
262 |
ctatattttgaagcaagagtccatattggctgagaatttccttttccacgccctcttattttctcgcgcgcccaggtacgctccatttacataaccctcc |
361 |
Q |
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| T |
51773294 |
ctatattttgaagcaagagtccatattggttgagaatttctttttccac--cctcttattttctcgcgcgcccaggtacgctccatttacataaccctcc |
51773391 |
T |
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| Q |
362 |
atttagatctatagatgcatgacacgtggtaaaaacacatccaaaggttgagatttaatattaaaacaacaattatttgtgctga-----ctcccctctt |
456 |
Q |
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| T |
51773392 |
atttagatctatagatgcatgacacgtggtaaaaacacatccaaaggttgagatttaatattaaaacaacaattatttgtgcttactcccctcccctctt |
51773491 |
T |
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| Q |
457 |
cctctcaacgccgtgcttcctccctgtcacaaaccaatccatgggtgcccttatcctcttccacacccttcttcttcacccacgttcaagcgacatcaaa |
556 |
Q |
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| T |
51773492 |
cctctcaaccccgtgcttcctccctgtcacaaaccaatccatggctgcccttatcctcttccacacccttcttcttcacccacgttcaagctacatcaaa |
51773591 |
T |
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| Q |
557 |
gcctcaattcagtttcttaattaatttctcctt--------tctctctaaaccttcaccaattatctatctctgtatcattgttctatattttgccaatt |
648 |
Q |
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| T |
51773592 |
gcctcaattcagtttcttaattaatttctcctttctctctctctctctaaaccttcatcaattatctatctctgtatcattgttctatattttgccaatt |
51773691 |
T |
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| Q |
649 |
ctttatccttttttatcatgattcccatcaattgatattaattcaaaggaatgaaagtatttggcttgtgaa |
720 |
Q |
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| T |
51773692 |
ctttatcc-tttttatcatgattcacatcaattgatattaattcaaaggaatgaaagtatttggcttgtgaa |
51773762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 51773049 - 51773177
Alignment:
| Q |
7 |
acaaagtaactacaagaaaattgtcgattggtatggttttttagggcataaattttgatttgcttgcatttagatttagcagaaatagatttgaattaaa |
106 |
Q |
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| T |
51773049 |
acaaagtaactacaagaaaattgtcgattggtatggttttttagggcacaaattttgatttgcttgcatttagatttagcagaaatagatttgaattaaa |
51773148 |
T |
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| Q |
107 |
gaaagtagacaaacaatacatgaatcttg |
135 |
Q |
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| T |
51773149 |
gaaagtagaccaacaatacatgaatcttg |
51773177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 45862916 - 45862833
Alignment:
| Q |
359 |
tccatttagatctatagatgcatgacacgtggtaaaaacacatccaaaggttgagatttaatattaaaacaacaattatttgtg |
442 |
Q |
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| T |
45862916 |
tccatttaagtctatggatgcatgacatgtggtaaaaacacatccaaaggctgaggtttaatattaaaacaacaattagttgtg |
45862833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 563
Target Start/End: Complemental strand, 45862771 - 45862694
Alignment:
| Q |
483 |
tcacaaaccaatccatgggtgcccttatcctcttccacacccttcttcttcacccacgttcaagcgacatcaaagcctcaa |
563 |
Q |
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| T |
45862771 |
tcacaaaccattccatggctgcccttctcctcttccacaccctt---cttcaccaacgttcaagctacatccaagcttcaa |
45862694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 482 - 614
Target Start/End: Original strand, 146016 - 146151
Alignment:
| Q |
482 |
gtcacaaaccaatccatgggtgcccttatcctcttccacacccttcttcttcacccacgttcaagcgacatcaaagcctcaattcagtttcttaattaat |
581 |
Q |
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| T |
146016 |
gtcacaaac-aatccattgttgcccttctcctcttccacacccttcttcttcaaccacgttcaagctacatccaagtttcaattcaattcatcaatgaat |
146114 |
T |
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| Q |
582 |
ttctcctt----tctctctaaaccttcaccaattatc |
614 |
Q |
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| T |
146115 |
ttctcctttttatatctctaaaccttcaccaattatc |
146151 |
T |
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