View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_13 (Length: 353)
Name: NF17330_high_13
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 18933894 - 18934237
Alignment:
| Q |
1 |
tccaaacacacaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtataga |
100 |
Q |
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| T |
18933894 |
tccaaacacacaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtataga |
18933993 |
T |
|
| Q |
101 |
gcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctagaacatcatcatcatcatcgagcttaaagtatttcttaa |
200 |
Q |
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| T |
18933994 |
gcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctaaaacatcatcatcatcatcgagcttaaaatatttcttaa |
18934093 |
T |
|
| Q |
201 |
ccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgttcctcatcagcccaacaacggcgtg |
300 |
Q |
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| T |
18934094 |
ccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgtttctcatcagcccaacaacggcgtg |
18934193 |
T |
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| Q |
301 |
ctttgcacttgtgtaggcatgtggagcgacaccacctatgcttc |
344 |
Q |
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| T |
18934194 |
ctttgcacttgtgtaggcatgtggagcgacaccacctatgcttc |
18934237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 18946091 - 18946419
Alignment:
| Q |
10 |
acaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtatagagcagcttca |
109 |
Q |
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| T |
18946091 |
acaaaatccattatttccgaccgtaagtccaccatctacaactagattgtgaccactaacatatttagactcatcacttcccaaatacaaagcagcttca |
18946190 |
T |
|
| Q |
110 |
gccacatcttttggcacaagattagcaccctttaggttagaataaacatctagaacatcatcatcatcatcgagcttaaagtatttcttaaccaacggag |
209 |
Q |
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| T |
18946191 |
gccacatcttttggcaaaagattagcaccctttaggttagaataaacatctagaactccatcatcatca---agcttaaagaaattcttagccaacggag |
18946287 |
T |
|
| Q |
210 |
ttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcact |
309 |
Q |
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| T |
18946288 |
ttccgacaacataaggtgacacacaattcactcgaataccgtacggtccaagctcgatggccgtatttttcattagcccaacaacggcgtgctttgaact |
18946387 |
T |
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| Q |
310 |
tgtgtaggcatgtggagcgacaccacctatgc |
341 |
Q |
| |
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| T |
18946388 |
tgtgtaggcatgtgaagccacaccacctatgc |
18946419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 3 - 344
Target Start/End: Original strand, 18929225 - 18929563
Alignment:
| Q |
3 |
caaacacacaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtatagagc |
102 |
Q |
| |
|
||||||||||||| ||||| ||| | || ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || | ||| |
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| T |
18929225 |
caaacacacaaaatccattgtttgcgacactgactcctccatctatgacaagattaagaccactaacatacttagactcatcacttcccaaatacaaagc |
18929324 |
T |
|
| Q |
103 |
agcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctagaacatcatcatcatcatcgagcttaaagtatttcttaacc |
202 |
Q |
| |
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| T |
18929325 |
agcttcagccacatcttttggcacaagattagtaccctttaggttagaaaaaatatctagagctccaccatcatca---agcttaaagaaatttgtaacc |
18929421 |
T |
|
| Q |
203 |
aacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgttcctcatcagcccaacaacggcgtgct |
302 |
Q |
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| T |
18929422 |
atcggagtcgcaagaaaataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgtgtttctcatcagcccaacaacggcgtgct |
18929521 |
T |
|
| Q |
303 |
ttgcacttgtgtaggcatgtggagcgacaccacctatgcttc |
344 |
Q |
| |
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||| ||||||||||||||||||||| |||||| ||||||| |
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| T |
18929522 |
ttgaacttgtgtaggcatgtggagcacaaccaccaatgcttc |
18929563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 39 - 344
Target Start/End: Original strand, 18938619 - 18938921
Alignment:
| Q |
39 |
ctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagcacc |
138 |
Q |
| |
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| T |
18938619 |
ctccatctacgacaagattgtgaccactaacatacttagattcgtcactgcccaagtaaagagaagcttcagccacatctttaggcacaagattagtacc |
18938718 |
T |
|
| Q |
139 |
ctttaggttagaataaacatctagaacatcatcatcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattc |
238 |
Q |
| |
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| T |
18938719 |
ctttaggttagaataaagccctagaagcccttcatcatca---agctttaagaagttcttagccatcggtgtggcgacaatataaggtgaaacacaattc |
18938815 |
T |
|
| Q |
239 |
acccgaataccaaaccgtccaagctcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccaccta |
338 |
Q |
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|||||||||| ||| ||||||| ||||| |||||||| ||||||||||| | ||| || ||||||| ||||||||||||||||| ||| | |||||||| |
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| T |
18938816 |
acccgaatactgaacggtccaagttcgattgccgtgtttctcatcagccccaaaacagcatgctttgaacttgtgtaggcatgtgaagccataccaccta |
18938915 |
T |
|
| Q |
339 |
tgcttc |
344 |
Q |
| |
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|||||| |
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| T |
18938916 |
tgcttc |
18938921 |
T |
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