View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_14 (Length: 350)
Name: NF17330_high_14
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 24908005 - 24907684
Alignment:
| Q |
1 |
tgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatgcttccgcaaagacgag |
100 |
Q |
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| T |
24908005 |
tgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatgcttccgcaaagacgag |
24907906 |
T |
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| Q |
101 |
tggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaatttagcggtacagatatt |
200 |
Q |
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| T |
24907905 |
tggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaatttagcggtacagatatt |
24907806 |
T |
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| Q |
201 |
gtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgtatttatcatttagttgttaggataca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
24907805 |
gtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgtatttatcgtttagttattaggataca |
24907706 |
T |
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| Q |
301 |
tgtggttccaaagggaatcatg |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
24907705 |
tgtggttccaaagggaatcatg |
24907684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 24890302 - 24889979
Alignment:
| Q |
1 |
tgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatgcttccgcaaagacgag |
100 |
Q |
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||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||| || |||||| |||||||||||||| |
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| T |
24890302 |
tgaaacatgttctacaaatgctttccaaacaagttcat--tatggagaaggcattgactgagcatggaatatacaaatagaatgcctccgcaaagacgag |
24890205 |
T |
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| Q |
101 |
tggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaatttagcggtacagatatt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24890204 |
tggttctttgaatgagatgtcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgacatcaaacctctacgcaatttagcggtacagatatt |
24890105 |
T |
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| Q |
201 |
gtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgtatttatc-atttagttgttaggatac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| || |||||| ||||||||||||| ||| ||||||||||||| |
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| T |
24890104 |
gtgacagagatgtttcctagatgatggttactatttgcaaatgatgttgggttcatacttttggtatgtgatgtatttatcttttttgttgttaggatac |
24890005 |
T |
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| Q |
300 |
atgtggttccaaagggaatcatgggt |
325 |
Q |
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||||||||||||||||||| |||||| |
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| T |
24890004 |
atgtggttccaaagggaataatgggt |
24889979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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