View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17330_high_15 (Length: 349)
Name: NF17330_high_15
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 35687895 - 35687563
Alignment:
| Q |
1 |
ttttactaccaaccatcttaagttacaagcagattaaataattttatgctcaggtaattagaatacaaaaaatcacataaatgaaacagaatgaccagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35687895 |
ttttactaccaaccatcttaagttacaagcagattaaataattttatgctcaggtaattagaatacaaaaa-tcacataaatgaaacagaatgaccagtg |
35687797 |
T |
|
| Q |
101 |
gattttcttttacaactagatgttcatattagaattatattgaacctataaaagtgtgtaccgtgagagtcgttcaagtagattttgatcagaacacttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35687796 |
gattttcttttacaactagatgttcatattagaattatattgaacctatgaaagtgtgtaccgtgagagtcgttcaagtagattttgatcagaacacttc |
35687697 |
T |
|
| Q |
201 |
aaagcacgatcatatacaatttcggttcttttggcaacatcatgccagctatagagttccctcatctacagaaaataaacagactgactaagtaactagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35687696 |
aaagcacgatcatatacaatttcggttcttttggcaacatcatgccagctatagagttccctcatctacagaaaataaacagactgactaagtaactagt |
35687597 |
T |
|
| Q |
301 |
ttacctgatgaaagcaaaagaaaagggtcaatta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35687596 |
ttacctgatgaaagcaaaagaaaagggtcaatta |
35687563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 40670406 - 40670522
Alignment:
| Q |
159 |
taccgtgagagtcgttcaagtagattttgatcagaacacttcaaagcacgatcatatacaatttcggttcttttggcaacatcatgccagctatagagtt |
258 |
Q |
| |
|
||||||||||| || || |||||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| | |||| |||||| | |
|
|
| T |
40670406 |
taccgtgagagacgctctagtagattttgatcggaacacttcaaagcacggtcatacacaatttcagtccttttggcaacatcgttccagtcatagagct |
40670505 |
T |
|
| Q |
259 |
ccctcatctacagaaaa |
275 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
40670506 |
ccctcacctacagaaaa |
40670522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University