View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_21 (Length: 269)
Name: NF17330_high_21
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_21 |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 58 - 252
Target Start/End: Original strand, 6679276 - 6679470
Alignment:
| Q |
58 |
tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6679276 |
tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat |
6679375 |
T |
|
| Q |
158 |
ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgt |
252 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6679376 |
ctgttgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgt |
6679470 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 6774935 - 6774816
Alignment:
| Q |
126 |
agcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctact |
225 |
Q |
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|||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
6774935 |
agcgaaaagtctcttaattagagaattgctatctgtcgacaaacaattgaaagtgaat-------ttctggacatcatcccagaggaaaattaccctact |
6774843 |
T |
|
| Q |
226 |
gaattctcttatagatcaagagtatgt |
252 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
6774842 |
gaattctcttatagatcaagagtatgt |
6774816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 6668365 - 6668471
Alignment:
| Q |
143 |
ttagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatc |
242 |
Q |
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||||||||||| ||||||| ||||||||| ||| |||||| || ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
6668365 |
ttagagaagtgatatctgttgacaaacaactgacagtgaagaagcagtttcaggacatcactccagaggagaattaccctgctgaattctcttatagatc |
6668464 |
T |
|
| Q |
243 |
aagagta |
249 |
Q |
| |
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||||||| |
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|
| T |
6668465 |
aagagta |
6668471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 6780150 - 6780044
Alignment:
| Q |
143 |
ttagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatc |
242 |
Q |
| |
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||||| ||||| ||||||| ||||||||| ||| |||||| || || |||| ||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
6780150 |
ttagaaaagtgatatctgttgacaaacaactgacagtgaagaagcaatttcgggacatcattccagaggagaattaccctgctgaattctcttatagatc |
6780051 |
T |
|
| Q |
243 |
aagagta |
249 |
Q |
| |
|
||||||| |
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|
| T |
6780050 |
aagagta |
6780044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6766132 - 6766091
Alignment:
| Q |
1 |
aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt |
42 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
6766132 |
aagtaacatgtatgttgtatgtgtgtgtagctaggtcatttt |
6766091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6775084 - 6775043
Alignment:
| Q |
1 |
aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt |
42 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||| |
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| T |
6775084 |
aagtaatatgtatgttctatgtgtgtgtagctaggtcatttt |
6775043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 58 - 249
Target Start/End: Complemental strand, 6162874 - 6162683
Alignment:
| Q |
58 |
tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat |
157 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
6162874 |
tattgatttgaaaattctagattatttacttatgtgtcttgaattactgcaaaattgcaggttttagcagcagaaagtctttcaattagagaagtgccat |
6162775 |
T |
|
| Q |
158 |
ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta |
249 |
Q |
| |
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|| ||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |
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| T |
6162774 |
ctatcgacaagcaattgaaagtgaataagcagtttctggacatcatcccataagagaattaccctgctgaattctcttatagatcaagagta |
6162683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 36848464 - 36848292
Alignment:
| Q |
77 |
gattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaa |
176 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |||||||| |
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| T |
36848464 |
gattatttacttgcgtggcttgaattactgcaaaattgcaggttttagcagcagaaaatctttcaattagagaagttctatctgtcgacaagcaattgaa |
36848365 |
T |
|
| Q |
177 |
agtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36848364 |
agtgaataagcagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta |
36848292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 36859848 - 36859750
Alignment:
| Q |
69 |
aaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaa |
167 |
Q |
| |
|
|||||||||||| ||||| |||||| | ||||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |
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|
| T |
36859848 |
aaattctagattctttacatatgtggcatgaattgctgcaaaattgcaggttttagcagaagaaaatctttcaattagagaaatgctatctgtcgacaa |
36859750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 6163484 - 6163424
Alignment:
| Q |
189 |
gtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta |
249 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6163484 |
gtttctggacattattccagatgagaattaccctgctgaattctcttatagatcaagagta |
6163424 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 36859748 - 36859700
Alignment:
| Q |
201 |
catcccagaggagaattaccctactgaattctcttatagatcaagagta |
249 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36859748 |
catcccggaggagaattaccctactgaattatcttatagatcaagagta |
36859700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 49881263 - 49881454
Alignment:
| Q |
58 |
tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat |
157 |
Q |
| |
|
|||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||||| ||||||||||| |||||||||||| ||| |
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|
| T |
49881263 |
tattgatttgaaaattctagattatttacgtatgtgccttgaattactgcaaaattgtaggtttcagcagcagaaagtctttctattagagaagtgttat |
49881362 |
T |
|
| Q |
158 |
ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||| |
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|
| T |
49881363 |
ctgtcgacaaacaattgaaagtgaataagctgtttctggacatcattccagaggaaaattaccctgccgaattctcttatagatcaagagta |
49881454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 65 - 249
Target Start/End: Original strand, 46521667 - 46521851
Alignment:
| Q |
65 |
ttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcga |
164 |
Q |
| |
|
|||||||||||| ||||||||||||||| || | ||| | |||||||||| ||||| |||| || || ||||||| |||||||||||| |||| ||||| |
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|
| T |
46521667 |
ttggaaattctatattatttacttatgtaccatcaattattgcaaaattgtaggttatagctgcaaaaggtctttctattagagaagtgttatccgtcga |
46521766 |
T |
|
| Q |
165 |
caaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta |
249 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
46521767 |
caaacaattgaaagtgaataagcagtttctggatatcattccagaggagaattaccctgctgaattctcttatagatcaagagta |
46521851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 18135288 - 18135429
Alignment:
| Q |
111 |
attgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagag |
210 |
Q |
| |
|
|||| ||||||||||||| |||| ||||| |||||||||| ||| ||| ||||| ||||||||||||| ||| ||||||||||||||||||| || |
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|
| T |
18135288 |
attgtaggttttagcagcagaaaatctttatgttagagaagttgtatttgttgacaagcaattgaaagtgattaagaagtttctggacatcatccctcag |
18135387 |
T |
|
| Q |
211 |
gagaattaccctactgaattctcttatagatcaagagtatgt |
252 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
18135388 |
gagaattaccctgctgaattctcttatagagcaagagtatgt |
18135429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13209 - 13250
Alignment:
| Q |
1 |
aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt |
42 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
13209 |
aagtaacatgtgtgttgtatgtgtgtgtagctaggtcatttt |
13250 |
T |
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