View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17330_high_22 (Length: 268)
Name: NF17330_high_22
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 32142579 - 32142695
Alignment:
| Q |
134 |
caaatctactttcgattctgttttaatctgtagaagtttctcaattaatataataacgagtaacatgacctcctcatttgtctcactttccaccattttc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142579 |
caaatctactttcgattctgttttaatctgtagaagtttctcaattaatataataactagtaacatgacctcctcatttgtctcactttccaccattttc |
32142678 |
T |
|
| Q |
234 |
caattccttgcaccttc |
250 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32142679 |
caattccttgcaccttc |
32142695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 32142446 - 32142551
Alignment:
| Q |
1 |
tttacatgtaatattttattgacaaactgaaaaataaaatcactaaaccttagcattactcactcacatatattccttctcaagaaaaatcttagcttcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142446 |
tttacatgtaatattttattgacaaactgaaaaataaaatcactaaaccttagcattactcactcacatatattccttctcaagaaaaatcttagcttct |
32142545 |
T |
|
| Q |
101 |
ttcaca |
106 |
Q |
| |
|
|||||| |
|
|
| T |
32142546 |
ttcaca |
32142551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University