View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_26 (Length: 241)
Name: NF17330_high_26
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_26 |
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| [»] scaffold0466 (1 HSPs) |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 25359124 - 25358901
Alignment:
| Q |
14 |
tgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaact |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25359124 |
tgtgaaaaacatcacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaact |
25359025 |
T |
|
| Q |
114 |
tgacgacaagagctagaaattcaacttttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcg |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25359024 |
tgacgacaagagctagaaattcaac-tttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacatcaacaagatataaattagtcg |
25358926 |
T |
|
| Q |
214 |
agatgtggtcttcatcgaagaagga |
238 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
25358925 |
agatgtggtcttcatcgaagaagga |
25358901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 180
Target Start/End: Complemental strand, 25618176 - 25618003
Alignment:
| Q |
6 |
aatatgtatgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaa |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25618176 |
aataagtatgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaa |
25618077 |
T |
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| Q |
106 |
gccaaacttgacgacaagagctagaaattcaacttttgttggttatcatcaaagttcaaagggaatcatgttgtc |
180 |
Q |
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| T |
25618076 |
gccaaacttgacgacaagagctagaaattcaactttt-ttggttatcatcaaagttctaagggaatcatgttgtc |
25618003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 25650893 - 25650704
Alignment:
| Q |
14 |
tgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaact |
113 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
25650893 |
tgtgaaaaataccgcaagatgcatagagtggaagaaattctagaatatcacacttgagggtcgcatatgttcatattttggacgataagaaagccaaact |
25650794 |
T |
|
| Q |
114 |
tgacgacaagagctagaaattcaacttttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaa |
206 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
25650793 |
tgacgaca--agctagaaattcaac-tttgttggttatcatcaaagttcaaagggaatcatgttttaaaaaatgaacaacaacaagatataaa |
25650704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 25399157 - 25398988
Alignment:
| Q |
14 |
tgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaact |
113 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399157 |
tgtgaaaaacatcacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaact |
25399058 |
T |
|
| Q |
114 |
tgacgacaagagctagaaattcaacttttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
191 |
Q |
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| T |
25399057 |
tgacgac-------agaaattcaac-tttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
25398988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 25392329 - 25392217
Alignment:
| Q |
128 |
agaaattcaacttttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttca |
227 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25392329 |
agaaattcaacttt-gttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttca |
25392231 |
T |
|
| Q |
228 |
tcgaagaaggagag |
241 |
Q |
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|||||||||||||| |
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| T |
25392230 |
tcgaagaaggagag |
25392217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 25495039 - 25494999
Alignment:
| Q |
92 |
tagacgataagaaagccaaacttgacgacaagagctagaaa |
132 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |
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| T |
25495039 |
tagacgataagaaagccaaaccagacgagaagagctagaaa |
25494999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 6296 - 6519
Alignment:
| Q |
14 |
tgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaact |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6296 |
tgtgaaaaacaccacaagatgcatagagtggaagaaattctagattatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaact |
6395 |
T |
|
| Q |
114 |
tgacgacaagagctagaaattcaacttttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcg |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6396 |
tgacgacaagagctagaaattcaac-cttgttggttatcatcaaagttcatagggaatcatgttgtcaaaaatg---aacaacaagatataaattagtcg |
6491 |
T |
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| Q |
214 |
agatgtggtcttcatcgaagaaggagag |
241 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
6492 |
agatgtggtcttcatcgaagaaggagag |
6519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 542 - 604
Alignment:
| Q |
168 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
230 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
542 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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