View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_27 (Length: 239)
Name: NF17330_high_27
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_27 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 6219717 - 6219562
Alignment:
| Q |
1 |
agcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatc |
100 |
Q |
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| T |
6219717 |
agcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatc |
6219618 |
T |
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| Q |
101 |
tggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
156 |
Q |
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| T |
6219617 |
tgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
6219562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 6346393 - 6346608
Alignment:
| Q |
1 |
agcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatc |
100 |
Q |
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| T |
6346393 |
agcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgtgaagc |
6346492 |
T |
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| Q |
101 |
tggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttg |
200 |
Q |
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| T |
6346493 |
tgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgttgttg |
6346592 |
T |
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| Q |
201 |
caaacccgattattgc |
216 |
Q |
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| T |
6346593 |
caaacccaattattgc |
6346608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 6333276 - 6333434
Alignment:
| Q |
1 |
agcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatc |
100 |
Q |
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| T |
6333276 |
agcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtgaaaa |
6333375 |
T |
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| Q |
101 |
tggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
159 |
Q |
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| T |
6333376 |
tgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6333434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 6325835 - 6325957
Alignment:
| Q |
37 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
136 |
Q |
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| T |
6325835 |
tgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaatatgtatcattgttacaagcaccaaagccaggtagtaa |
6325934 |
T |
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| Q |
137 |
agagcaaccatgaaaactaaagc |
159 |
Q |
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| T |
6325935 |
agagaaaccatgaaaactaaagc |
6325957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 6242845 - 6242758
Alignment:
| Q |
37 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaa |
124 |
Q |
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| T |
6242845 |
tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaa |
6242758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 1053 - 992
Alignment:
| Q |
37 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaa |
98 |
Q |
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| T |
1053 |
tgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgatgtgaa |
992 |
T |
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