View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17330_high_29 (Length: 226)
Name: NF17330_high_29
Description: NF17330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17330_high_29 |
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| [»] scaffold0466 (1 HSPs) |
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| [»] scaffold1041 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 25392225 - 25392033
Alignment:
| Q |
17 |
gaaggagagtgagacgttattactcaccaaaaggaata-ggttttcttccagaatttgaagaagaaaaatttagagaagttgaacaaaattttccacttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25392225 |
gaaggagagtgagacgttattactcaccaaaaggaatacggttttcttccagaatttgaagaagaaaaatttagagaagttgaacaaaattttccacttc |
25392126 |
T |
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| Q |
116 |
tgtagacattatgagggaaaggatcgtgatatgcacatgtagtattcataccactatgacaacacagagctcttatcacctcgatgacttaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25392125 |
tgtagacattatgagggaaaggatcgtgatatgcacatgtagtattcataccactatgacaacacagagctcttatcaccttgatgacttaaa |
25392033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 25358906 - 25358745
Alignment:
| Q |
17 |
gaaggagagtgagacgttattactcaccaaaaggaata-ggttttcttccagaatttgaagaagaaaaatttagagaagttgaacaaaattttccacttc |
115 |
Q |
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|||||| ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25358906 |
gaaggaaagtgagatgttattactcactaaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaacaaaattttccacttc |
25358807 |
T |
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| Q |
116 |
tgtagacattatgagggaaaggatcgtgatatgcacatgtagtattcataccactatgacaa |
177 |
Q |
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| T |
25358806 |
tgtagacattatgagggaaaggatcgtgatatgcacatgtagtattcataccactatgacaa |
25358745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 25650629 - 25650541
Alignment:
| Q |
100 |
caaaattttccacttctgtagacattatgagggaaaggatcgtgatatgcacatgtagtattcataccactatgacaacacagagctct |
188 |
Q |
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| T |
25650629 |
caaaattgtccacttatgtagacattaggagggaaaggattgtgatatgcacacgtagtattcatatcactatgacaacacaaagctct |
25650541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 25650706 - 25650648
Alignment:
| Q |
45 |
aaaaggaata-ggttttcttccagaatttgaagaagaaaaatttagagaagttgaacaa |
102 |
Q |
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| T |
25650706 |
aaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaacaa |
25650648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 6511 - 6708
Alignment:
| Q |
17 |
gaaggagagtgagacgttattactcaccaaaaggaata-ggttttcttccagaatttgaagaagaaaaatttagagaagttgaacaa------------- |
102 |
Q |
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||||||||| ||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6511 |
gaaggagagcgagacgttattactcactcaaaggaatacggtttccttcaagaatttgaagaagaaaaatttagagaagttgaacaagtgtcacacttac |
6610 |
T |
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| Q |
103 |
---aattttccacttctgtagacattatgagggaaaggatcgtgatatgcacatgtagtattcataccactatgacaacacagagctcttatcacctc |
197 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||| || |||| ||||||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
6611 |
caaaattgtccacttctgtagacattaggagggaaaggatcgtgagatacacacgtagtatccatatcactatgacaacacatagctcttatcacctc |
6708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 650 - 710
Alignment:
| Q |
100 |
caaaattttccacttctgtagacattatgagggaaaggatcgtgatatgcacatgtagtat |
160 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
650 |
caaaattttccacttctgtagacattaggagggaaaggatcgtgatatgcacacgtagtat |
710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 605 - 636
Alignment:
| Q |
71 |
ttgaagaagaaaaatttagagaagttgaacaa |
102 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
605 |
ttgaagaagaaaaatttagagaagttgaacaa |
636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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